Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   Sa5Y_RS20835 Genome accession   NZ_CP028892
Coordinates   187805..188665 (-) Length   286 a.a.
NCBI ID   WP_108243932.1    Uniprot ID   -
Organism   Vibrio cholerae strain Sa5Y     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 182805..193665
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Sa5Y_RS00945 (Sa5Y_VC00183) gspL 183063..184274 (+) 1212 WP_162298789.1 type II secretion system protein GspL -
  Sa5Y_RS00950 (Sa5Y_VC00184) gspM 184284..184781 (+) 498 WP_000661347.1 type II secretion system protein GspM -
  Sa5Y_RS00955 (Sa5Y_VC00185) - 184783..185541 (+) 759 WP_108243663.1 type II secretion system protein N -
  Sa5Y_RS00960 (Sa5Y_VC00186) cysQ 185593..186420 (-) 828 WP_071179789.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  Sa5Y_RS00965 (Sa5Y_VC00187) nudE 186443..186991 (-) 549 WP_000095817.1 ADP compounds hydrolase NudE -
  Sa5Y_RS00970 (Sa5Y_VC00188) nfuA 187130..187717 (-) 588 WP_000070178.1 Fe-S biogenesis protein NfuA -
  Sa5Y_RS20835 (Sa5Y_VC00189) comF 187805..188665 (-) 861 WP_108243932.1 ComF family protein Machinery gene
  Sa5Y_RS00980 (Sa5Y_VC00190) bioH 188601..189362 (+) 762 WP_069731291.1 pimeloyl-ACP methyl ester esterase BioH -
  Sa5Y_RS00985 (Sa5Y_VC00191) - 189524..189994 (+) 471 WP_000961393.1 hypothetical protein -
  Sa5Y_RS00990 (Sa5Y_VC00192) - 190089..192410 (-) 2322 WP_108243664.1 Tex family protein -
  Sa5Y_RS00995 (Sa5Y_VC00193) greB 192655..193140 (+) 486 WP_029627711.1 transcription elongation factor GreB -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 32615.50 Da        Isoelectric Point: 7.9437

>NTDB_id=288237 Sa5Y_RS20835 WP_108243932.1 187805..188665(-) (comF) [Vibrio cholerae strain Sa5Y]
MPQPCTNTRSCPCPLTCQYNAMVTVSPSISIFIHSTNWQDEAHYPDSWLAMLTHWLRKTTAPLLTPECHLCRLALDTNSP
FGVCSACQAWLEHGYRCARCGLPTLTPVDQCGQCLGQPPPWRKLMCVGDYRFPLSDAVHQLKYQRQFWQAPRLAKLLATQ
INEPAPLLCSVPLHWRRRWQRGFNQSDLLARELANVLNIEYDHQLFARRRATPHQQGLSKAQRIHNLRDAFVLNHPPNQP
HVAIVDDVVTTGSTIRHLCDLLLDVGVQSIDIYCICRTPEPKDSHD

Nucleotide


Download         Length: 861 bp        

>NTDB_id=288237 Sa5Y_RS20835 WP_108243932.1 187805..188665(-) (comF) [Vibrio cholerae strain Sa5Y]
ATGCCCCAGCCGTGTACCAATACCAGATCTTGCCCTTGTCCACTGACTTGCCAATACAACGCCATGGTCACAGTTTCTCC
GTCTATTTCCATCTTCATCCACTCTACCAATTGGCAAGATGAAGCACATTACCCAGATTCTTGGCTCGCTATGTTAACCC
ATTGGCTCAGAAAAACTACCGCACCACTGCTGACTCCGGAATGTCATCTCTGCCGACTGGCGCTCGATACAAATTCGCCG
TTTGGCGTCTGCTCTGCCTGCCAAGCTTGGCTTGAGCACGGTTATCGCTGCGCACGCTGCGGTTTACCGACTCTTACCCC
TGTTGATCAGTGCGGGCAGTGTTTGGGTCAGCCTCCGCCGTGGCGAAAACTGATGTGTGTCGGCGATTACCGCTTCCCAC
TCAGTGATGCGGTGCATCAACTCAAATACCAACGCCAGTTTTGGCAAGCGCCGCGCTTGGCTAAGCTACTCGCCACCCAG
ATTAACGAGCCAGCCCCGTTGCTGTGCAGTGTACCGCTACATTGGCGGCGACGTTGGCAACGCGGCTTTAATCAAAGCGA
TCTGCTGGCACGTGAATTAGCCAATGTGCTGAACATTGAATATGACCACCAACTCTTTGCACGCCGCCGAGCCACACCGC
ATCAACAAGGACTCAGCAAGGCGCAGCGAATCCACAACCTACGTGATGCGTTTGTGCTGAATCATCCGCCAAACCAACCA
CATGTTGCGATTGTGGACGATGTGGTGACCACAGGCAGTACGATCCGACATTTATGCGATTTACTGCTTGATGTCGGTGT
GCAAAGCATTGATATTTACTGCATATGCCGCACTCCCGAGCCGAAAGATAGCCACGATTGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(189-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

98.947

99.65

0.986
  comF Vibrio campbellii strain DS40M4

46.639

83.217

0.388

Multiple sequence alignment