Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   EAL91_RS06330 Genome accession   NZ_CP034147
Coordinates   1285964..1286224 (+) Length   86 a.a.
NCBI ID   WP_000602757.1    Uniprot ID   B5Z817
Organism   Helicobacter pylori strain HP14039     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1280964..1291224
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EAL91_RS06310 frxA 1282431..1282925 (-) 495 Protein_1194 NAD(P)H-dependent flavin oxidoreductase FrxA -
  EAL91_RS06315 - 1282979..1283743 (+) 765 WP_033756322.1 hypothetical protein -
  EAL91_RS06320 - 1283755..1285671 (+) 1917 WP_129484913.1 toprim domain-containing protein -
  EAL91_RS06325 - 1285661..1285963 (+) 303 WP_120914043.1 TrbC/VirB2 family protein -
  EAL91_RS06330 comB3 1285964..1286224 (+) 261 WP_000602757.1 hypothetical protein Machinery gene
  EAL91_RS06335 - 1286237..1288735 (+) 2499 WP_129484915.1 VirB4 family type IV secretion system protein -
  EAL91_RS06340 - 1288728..1290662 (+) 1935 WP_033756459.1 type IA DNA topoisomerase -

Sequence

Protein


Download         Length: 86 a.a.        Molecular weight: 10140.01 Da        Isoelectric Point: 4.6082

>NTDB_id=288041 EAL91_RS06330 WP_000602757.1 1285964..1286224(+) (comB3) [Helicobacter pylori strain HP14039]
MILNYVETINVREISKKEKFLKLNMNSWIISFLSASFLFVWSLLYGVVLLVALVTMFYILEFFDEDITNIILANLTLKND
TKEYYA

Nucleotide


Download         Length: 261 bp        

>NTDB_id=288041 EAL91_RS06330 WP_000602757.1 1285964..1286224(+) (comB3) [Helicobacter pylori strain HP14039]
ATGATTTTAAATTATGTAGAGACCATCAATGTTAGAGAAATATCTAAAAAAGAGAAGTTTTTAAAGCTTAATATGAATAG
TTGGATAATTTCTTTTTTGAGCGCTTCTTTCTTATTTGTGTGGTCTTTATTATATGGCGTGGTGCTATTGGTGGCATTAG
TAACAATGTTTTACATACTAGAATTTTTTGATGAAGATATTACAAACATTATTTTGGCAAACCTAACGCTAAAAAATGAT
ACTAAAGAATATTATGCTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B5Z817

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

44.828

100

0.453

Multiple sequence alignment