Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   DB248_RS02360 Genome accession   NZ_CP028841
Coordinates   428405..429214 (+) Length   269 a.a.
NCBI ID   WP_002985641.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain CCUG 4207     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 423405..434214
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DB248_RS02340 (DB248_02340) - 423847..425094 (+) 1248 WP_010921989.1 AMP-binding protein -
  DB248_RS02345 (DB248_02345) - 425150..426184 (+) 1035 WP_011285430.1 DUF3114 domain-containing protein -
  DB248_RS02350 (DB248_02350) vicR 426346..427056 (+) 711 WP_002985645.1 response regulator YycF Regulator
  DB248_RS02355 (DB248_02355) vicK 427049..428401 (+) 1353 WP_002995609.1 cell wall metabolism sensor histidine kinase VicK Regulator
  DB248_RS02360 (DB248_02360) vicX 428405..429214 (+) 810 WP_002985641.1 MBL fold metallo-hydrolase Regulator
  DB248_RS02365 (DB248_02365) rnc 429658..430350 (+) 693 WP_002990670.1 ribonuclease III -
  DB248_RS02370 (DB248_02370) smc 430351..433890 (+) 3540 WP_010921991.1 chromosome segregation protein SMC -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 30095.20 Da        Isoelectric Point: 5.5314

>NTDB_id=288020 DB248_RS02360 WP_002985641.1 428405..429214(+) (vicX) [Streptococcus pyogenes strain CCUG 4207]
MNESGFKYSILASGSTGNCFYLETPKKRLLIDAGLTGKKITSLLAEIDRKPEDLDAILITHEHSDHIKGVGVMARKYHLD
IYANEKTWQLMDECNMLGKLDASQKHIFQRDKVLTFGDVDIESFGVSHDAIDPQFYRIMKDNKSFVMLTDTGYVSDRMTG
IIENADGYLIESNHDIEILRSGSYPWSLKQRILSDLGHLSNEDGAGAMIRSLGYNTKKIYLGHLSKENNIKELAHMTMVN
QLAMADLAVGTDFTVHDTSPDTACPLTDI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=288020 DB248_RS02360 WP_002985641.1 428405..429214(+) (vicX) [Streptococcus pyogenes strain CCUG 4207]
ATGAATGAGAGTGGTTTTAAATACAGTATTTTAGCATCTGGGTCCACAGGAAATTGTTTTTATTTAGAAACACCTAAAAA
ACGCTTATTGATTGATGCAGGGCTTACTGGTAAGAAAATTACCAGTCTTCTTGCTGAAATTGACCGCAAACCTGAGGATT
TGGATGCTATTTTGATTACCCATGAGCACTCTGACCATATTAAGGGTGTAGGCGTTATGGCCCGCAAATACCATTTGGAT
ATCTATGCTAATGAAAAAACATGGCAGCTGATGGATGAGTGCAATATGCTAGGTAAGCTTGATGCCTCACAAAAACATAT
TTTCCAAAGGGATAAAGTTTTGACCTTTGGAGATGTTGATATCGAAAGTTTTGGAGTCAGCCATGACGCTATTGATCCTC
AATTTTATCGGATTATGAAAGATAATAAGTCTTTTGTGATGTTGACAGATACAGGATATGTCAGTGATAGGATGACAGGT
ATTATTGAAAATGCAGATGGCTACTTGATTGAATCCAATCATGATATTGAAATTTTGAGATCAGGCTCTTATCCTTGGAG
CTTAAAGCAGCGTATTTTATCTGATTTAGGACATTTATCAAATGAAGATGGAGCGGGAGCCATGATTAGAAGCCTGGGGT
ACAATACCAAAAAAATATACCTAGGTCATCTGAGTAAAGAAAATAACATCAAAGAGTTAGCGCATATGACGATGGTCAAT
CAACTGGCTATGGCAGATTTAGCAGTAGGTACAGACTTTACGGTCCATGATACCTCTCCAGATACTGCTTGTCCATTAAC
TGATATTTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

75.836

100

0.758

Multiple sequence alignment