Detailed information    

insolico Bioinformatically predicted

Overview

Name   proC   Type   Machinery gene
Locus tag   CHAB381_RS02635 Genome accession   NC_009714
Coordinates   502655..503401 (+) Length   248 a.a.
NCBI ID   WP_041570464.1    Uniprot ID   -
Organism   Campylobacter hominis ATCC BAA-381     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 497655..508401
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CHAB381_RS02620 (CHAB381_0548) - 498047..498736 (+) 690 WP_012108423.1 dUTP diphosphatase -
  CHAB381_RS08615 - 498768..498947 (+) 180 WP_232215079.1 FtsW/RodA/SpoVE family cell cycle protein -
  CHAB381_RS02625 (CHAB381_0549) lon 499506..501884 (-) 2379 WP_012108424.1 endopeptidase La -
  CHAB381_RS02630 (CHAB381_0550) - 501894..502532 (-) 639 WP_012108425.1 outer membrane protein assembly factor BamD -
  CHAB381_RS02635 (CHAB381_0551) proC 502655..503401 (+) 747 WP_041570464.1 pyrroline-5-carboxylate reductase Machinery gene
  CHAB381_RS08410 (CHAB381_0552) - 503478..504089 (+) 612 WP_012108427.1 type II secretion system protein -
  CHAB381_RS02645 (CHAB381_0553) - 504102..505037 (+) 936 WP_012108428.1 type II secretion system protein -
  CHAB381_RS08415 (CHAB381_0554) - 505034..505477 (+) 444 WP_012108429.1 hypothetical protein -
  CHAB381_RS02655 (CHAB381_0555) hpf 505491..506033 (+) 543 WP_012108430.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  CHAB381_RS02660 (CHAB381_0556) ffh 506246..507580 (+) 1335 WP_012108431.1 signal recognition particle protein -
  CHAB381_RS02665 (CHAB381_0557) rpsP 507642..507869 (+) 228 WP_012108432.1 30S ribosomal protein S16 -
  CHAB381_RS02670 (CHAB381_0558) - 507872..508114 (+) 243 WP_012108433.1 KH domain-containing protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26782.31 Da        Isoelectric Point: 8.5505

>NTDB_id=28795 CHAB381_RS02635 WP_041570464.1 502655..503401(+) (proC) [Campylobacter hominis ATCC BAA-381]
MKIYILGNGAMASAMAYGMKNKYEIIIVGRNSEKLSSLRKAGFKCEIYGEKYDISGKIIILAFKPYALSQMSKILSGKAE
ILISVMAGITLNDLKILKSDISVVCMPNIAAKYGSSTTPYFSDSNDLRIDEILGSFGGCVRLENENDLNAAGVLSGCVPA
YLALVAEALANGGVKEGLKKEISQNLVNKVFESSAKLLENFHPALLKEQVCSPCGTTIKGIFELEKFKVRAAFMDAVEAS
CSKNSTKF

Nucleotide


Download         Length: 747 bp        

>NTDB_id=28795 CHAB381_RS02635 WP_041570464.1 502655..503401(+) (proC) [Campylobacter hominis ATCC BAA-381]
ATGAAAATTTATATACTTGGAAACGGCGCAATGGCGAGCGCTATGGCATATGGAATGAAAAATAAATATGAAATAATAAT
TGTCGGCAGAAATTCAGAAAAACTTTCATCTTTACGCAAAGCCGGTTTTAAATGCGAAATTTACGGAGAAAAATATGATA
TAAGCGGCAAAATTATAATTTTAGCTTTTAAGCCTTATGCTCTTAGTCAAATGAGTAAAATTTTAAGCGGAAAAGCTGAA
ATTTTAATAAGCGTAATGGCTGGAATAACTTTAAATGATTTAAAAATTTTAAAATCTGATATAAGTGTTGTTTGTATGCC
GAATATCGCTGCTAAATACGGCTCTTCAACAACACCTTATTTTTCAGATTCCAATGATTTGCGAATTGATGAAATTTTAG
GAAGTTTCGGCGGTTGCGTCAGGCTTGAAAATGAAAATGATTTAAACGCGGCAGGCGTGCTTTCAGGTTGCGTTCCTGCA
TATTTGGCGCTTGTAGCGGAAGCTCTTGCTAATGGCGGCGTAAAAGAAGGACTTAAAAAAGAAATTTCTCAAAATTTGGT
AAATAAAGTTTTTGAAAGTTCGGCAAAACTTTTGGAAAATTTTCATCCGGCACTCTTAAAAGAGCAGGTTTGTTCTCCTT
GCGGAACTACGATTAAAGGGATTTTCGAGCTTGAAAAATTTAAAGTAAGAGCTGCTTTTATGGACGCTGTTGAAGCAAGC
TGTTCTAAAAATAGCACAAAATTTTAA

Domains

Predicted by InterproScan.

Pyrroline-5-carboxylate reductase dimerisation (P5CR_dimer)

(145-244)

NADP oxidoreductase coenzyme F420-dependent (F420_oxidored)

(2-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  proC Campylobacter jejuni subsp. jejuni 81-176

51.44

97.984

0.504

Multiple sequence alignment