Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   CDG57_RS14740 Genome accession   NZ_CP028800
Coordinates   3009622..3009948 (-) Length   108 a.a.
NCBI ID   WP_004958548.1    Uniprot ID   A0A8I0S2H5
Organism   Acinetobacter junii strain WCHAJ59     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3004622..3014948
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDG57_RS14720 (CDG57_14710) - 3004878..3005489 (-) 612 WP_087540383.1 FHA domain-containing protein -
  CDG57_RS14725 (CDG57_14715) gspD 3005553..3007808 (-) 2256 WP_087540384.1 type II secretion system secretin GspD -
  CDG57_RS14730 (CDG57_14720) - 3007850..3008698 (-) 849 WP_004957388.1 type II secretion system protein N -
  CDG57_RS14735 (CDG57_14725) gspN 3008698..3009441 (-) 744 WP_005403545.1 type II secretion system protein N -
  CDG57_RS14740 (CDG57_14730) hns 3009622..3009948 (-) 327 WP_004958548.1 H-NS family nucleoid-associated regulatory protein Regulator
  CDG57_RS14745 (CDG57_14735) - 3010331..3010762 (-) 432 WP_004958542.1 acyl-CoA thioesterase -
  CDG57_RS14750 (CDG57_14740) - 3010771..3011964 (-) 1194 WP_087540386.1 hypothetical protein -
  CDG57_RS14755 (CDG57_14745) - 3011971..3012801 (-) 831 WP_087540387.1 hypothetical protein -
  CDG57_RS14760 (CDG57_14750) - 3012798..3013574 (-) 777 WP_087540389.1 uroporphyrinogen-III synthase -
  CDG57_RS14765 (CDG57_14755) hemC 3013576..3014493 (-) 918 WP_004916978.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12343.00 Da        Isoelectric Point: 5.0355

>NTDB_id=287817 CDG57_RS14740 WP_004958548.1 3009622..3009948(-) (hns) [Acinetobacter junii strain WCHAJ59]
MKPDISDLSVEDLKRLQAEAEALIASKKDQAIEDAYNQIIAIAENVGYSVEELLELGEQKRKKTTRKAVEPRYRNKNNAE
ETWTGRGKQPRWLVAELEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=287817 CDG57_RS14740 WP_004958548.1 3009622..3009948(-) (hns) [Acinetobacter junii strain WCHAJ59]
ATGAAACCAGATATTAGTGATTTATCTGTTGAAGATCTCAAGCGTTTGCAAGCTGAAGCTGAAGCTTTAATTGCAAGCAA
AAAAGATCAAGCAATTGAAGATGCTTATAATCAAATTATTGCGATTGCTGAAAACGTTGGATACAGCGTTGAAGAGCTTT
TGGAGCTTGGTGAGCAAAAACGTAAGAAAACAACCCGTAAAGCTGTTGAGCCGCGTTACCGTAATAAAAATAATGCAGAA
GAAACTTGGACAGGTCGCGGTAAGCAACCACGTTGGTTAGTTGCAGAATTAGAGAAAGGTGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(13-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

90.741

100

0.907

Multiple sequence alignment