Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AOY77_RS09840 Genome accession   NZ_CP028751
Coordinates   2031030..2031659 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain A24     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2026030..2036659
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOY77_RS09820 (AOY77_10450) ycbZ 2026430..2028192 (-) 1763 Protein_1908 Lon protease family protein -
  AOY77_RS09825 (AOY77_10455) matP 2028378..2028830 (+) 453 WP_000877152.1 macrodomain Ter protein MatP -
  AOY77_RS09830 (AOY77_10460) ompA 2028906..2029946 (-) 1041 WP_001313715.1 porin OmpA -
  AOY77_RS09835 (AOY77_10470) sulA 2030302..2030811 (-) 510 WP_000288707.1 SOS-induced cell division inhibitor SulA -
  AOY77_RS09840 (AOY77_10475) sxy/tfoX 2031030..2031659 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  AOY77_RS09845 (AOY77_10480) yccS 2031622..2033784 (-) 2163 WP_000875067.1 YccS family putative transporter -
  AOY77_RS09850 (AOY77_10485) yccF 2033794..2034240 (-) 447 WP_001261235.1 YccF domain-containing protein -
  AOY77_RS09855 (AOY77_10490) helD 2034363..2036417 (+) 2055 WP_001541157.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=287250 AOY77_RS09840 WP_000839153.1 2031030..2031659(+) (sxy/tfoX) [Escherichia coli strain A24]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=287250 AOY77_RS09840 WP_000839153.1 2031030..2031659(+) (sxy/tfoX) [Escherichia coli strain A24]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGTATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCAAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment