Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   BCER98_RS12560 Genome accession   NC_009674
Coordinates   2578031..2578810 (-) Length   259 a.a.
NCBI ID   WP_012094920.1    Uniprot ID   A7GRF8
Organism   Bacillus cytotoxicus NVH 391-98     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2573031..2583810
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BCER98_RS12535 (Bcer98_2475) - 2573694..2574470 (-) 777 WP_012094915.1 isoprenyl transferase -
  BCER98_RS12540 (Bcer98_2476) frr 2574556..2575113 (-) 558 WP_012094916.1 ribosome recycling factor -
  BCER98_RS12545 (Bcer98_2477) pyrH 2575116..2575838 (-) 723 WP_012094917.1 UMP kinase -
  BCER98_RS12550 (Bcer98_2478) tsf 2575905..2576792 (-) 888 WP_012094918.1 translation elongation factor Ts -
  BCER98_RS12555 (Bcer98_2479) rpsB 2576876..2577577 (-) 702 WP_012094919.1 30S ribosomal protein S2 -
  BCER98_RS12560 (Bcer98_2480) codY 2578031..2578810 (-) 780 WP_012094920.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  BCER98_RS12565 (Bcer98_2481) hslU 2578887..2580278 (-) 1392 WP_012094921.1 ATP-dependent protease ATPase subunit HslU -
  BCER98_RS12570 (Bcer98_2482) hslV 2580301..2580843 (-) 543 WP_012094922.1 ATP-dependent protease proteolytic subunit HslV -
  BCER98_RS12575 (Bcer98_2483) xerC 2580887..2581786 (-) 900 WP_012094923.1 tyrosine recombinase XerC -
  BCER98_RS12580 (Bcer98_2484) trmFO 2581852..2583156 (-) 1305 WP_012094924.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28843.11 Da        Isoelectric Point: 4.8041

>NTDB_id=28648 BCER98_RS12560 WP_012094920.1 2578031..2578810(-) (codY) [Bacillus cytotoxicus NVH 391-98]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQNLF
NVTETSSNLDVNSEYTAFPVENKDLFGQGLTTIVPIVGGGERLGTLVLARLGREFLDDDLILAEYSATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLHELAKLKTN

Nucleotide


Download         Length: 780 bp        

>NTDB_id=28648 BCER98_RS12560 WP_012094920.1 2578031..2578810(-) (codY) [Bacillus cytotoxicus NVH 391-98]
ATGGAATTATTAGCAAAAACAAGAAAATTAAATGCTTTATTACAAAGCGCAGCAGGAAAACCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATTGAAGCGAACGTATTCGTTGTGAGCCGTCGCGGTAAATTACTAGGATATGCAATCC
ATCAACAAATCGAGAATGAGCGTATGAAACAAATGCTTGCAGAGCGTCAATTCCCAGAGGAATATACACAAAACTTATTC
AACGTTACTGAAACATCTTCAAATTTAGATGTAAATAGCGAATATACAGCTTTCCCTGTAGAAAACAAAGATTTATTCGG
GCAAGGCTTAACGACAATCGTGCCGATCGTGGGCGGTGGTGAGCGTCTAGGTACATTAGTATTAGCTCGTCTAGGTCGTG
AATTCTTAGATGATGATTTAATTCTTGCTGAGTACAGTGCAACTGTAGTAGGTATGGAAATTTTACGTGAAAAAGCAGAA
GAGATTGAAGAAGAAGCTCGCAGCAAAGCTGTTGTTCAAATGGCGATTAGCTCTCTATCTTACAGTGAGTTAGAAGCGAT
TGAACATATCTTTGAAGAGTTAAACGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGATCGCGTAGGAATTACTC
GTTCTGTAATTGTGAATGCACTTCGTAAATTAGAAAGTGCGGGAGTAATTGAATCGCGTTCTTTAGGTATGAAAGGAACA
TACATTAAAGTATTAAATGACAAATTCTTACACGAACTTGCAAAATTAAAAACAAACTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7GRF8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

83.012

100

0.83
  codY Lactococcus lactis subsp. lactis strain DGCC12653

46.275

98.456

0.456

Multiple sequence alignment