Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   EGM96_RS04160 Genome accession   NZ_CP033876
Coordinates   886850..887347 (+) Length   165 a.a.
NCBI ID   WP_031961388.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain WU_164     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 881850..892347
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGM96_RS04125 (EGM96_04140) - 881861..883966 (-) 2106 WP_001117590.1 RelA/SpoT family protein -
  EGM96_RS04130 (EGM96_04145) - 884006..884136 (-) 131 Protein_789 hypothetical protein -
  EGM96_RS04135 (EGM96_04150) rpoZ 884175..884453 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  EGM96_RS04140 (EGM96_04155) gmk 884526..885155 (-) 630 WP_000015937.1 guanylate kinase -
  EGM96_RS04145 (EGM96_04160) ispH 885278..886228 (+) 951 WP_031961390.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  EGM96_RS04150 (EGM96_04165) - 886241..886489 (-) 249 Protein_793 hypothetical protein -
  EGM96_RS04155 (EGM96_04170) - 886395..886835 (+) 441 WP_031961389.1 pilus assembly FimT family protein -
  EGM96_RS04160 (EGM96_04175) pilV 886850..887347 (+) 498 WP_031961388.1 type IV pilus modification protein PilV Machinery gene
  EGM96_RS04165 (EGM96_04180) - 887340..888257 (+) 918 WP_031961387.1 PilW family protein -
  EGM96_RS04170 (EGM96_04185) - 888254..888943 (+) 690 WP_079281925.1 pilus assembly PilX family protein -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 17555.04 Da        Isoelectric Point: 4.8148

>NTDB_id=285646 EGM96_RS04160 WP_031961388.1 886850..887347(+) (pilV) [Acinetobacter baumannii strain WU_164]
MIMSQKGAGLMEVLVALLLLSIAVLGFVALQIRAVAASTEAGQNIQATNIARDLAERIRVNRAGLSNYAEIGASDVLPTC
STGECDADQMAKYDYAQVKQRATDLGMSLAILNCKGFSSQRTRQCIYVAWGGTTATDGNGSPNCTNGTAYVPDAKCIIME
VYNYD

Nucleotide


Download         Length: 498 bp        

>NTDB_id=285646 EGM96_RS04160 WP_031961388.1 886850..887347(+) (pilV) [Acinetobacter baumannii strain WU_164]
ATGATAATGTCTCAAAAAGGTGCTGGTTTAATGGAAGTTCTTGTTGCACTACTTTTATTGAGTATTGCTGTACTTGGTTT
TGTTGCTTTACAAATACGAGCAGTTGCTGCAAGTACTGAAGCAGGTCAGAACATTCAAGCAACCAATATTGCCCGAGATT
TAGCAGAGCGTATACGTGTAAACCGAGCTGGTTTGAGTAACTATGCTGAAATTGGTGCAAGTGACGTACTGCCAACTTGT
TCTACAGGGGAGTGTGATGCTGATCAGATGGCAAAATACGATTATGCCCAAGTCAAACAACGTGCTACAGATTTAGGTAT
GAGTCTTGCAATATTGAATTGTAAAGGTTTTTCATCACAACGAACTCGTCAATGTATATATGTAGCATGGGGTGGTACAA
CAGCTACAGATGGTAATGGTAGTCCGAATTGTACTAATGGTACCGCCTATGTACCTGACGCAAAATGTATCATTATGGAG
GTTTATAACTATGATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Acinetobacter baumannii D1279779

39.548

100

0.424
  pilV Acinetobacter baylyi ADP1

36.932

100

0.394