Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   NGK_RS05005 Genome accession   NC_011035
Coordinates   908777..909394 (-) Length   205 a.a.
NCBI ID   WP_003688660.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae NCCP11945     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 903777..914394
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NGK_RS04985 (NGK_1106) recD 904470..906215 (-) 1746 WP_003688652.1 exodeoxyribonuclease V subunit alpha Machinery gene
  NGK_RS04990 (NGK_1107) lolD 906282..906977 (-) 696 WP_003688655.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  NGK_RS04995 (NGK_1108) - 906970..908217 (-) 1248 WP_003691197.1 lipoprotein-releasing ABC transporter permease subunit -
  NGK_RS14365 (NGK_1110) - 908443..908721 (+) 279 WP_003688659.1 hypothetical protein -
  NGK_RS05005 (NGK_1111) recR 908777..909394 (-) 618 WP_003688660.1 recombination mediator RecR Machinery gene
  NGK_RS05010 (NGK_1112) - 909461..910999 (-) 1539 WP_003695299.1 SurA N-terminal domain-containing protein -
  NGK_RS05015 (NGK_1113) - 911048..911422 (-) 375 WP_003688664.1 arsenate reductase -
  NGK_RS05020 (NGK_1114) - 911572..913200 (+) 1629 WP_010951119.1 ABC-F family ATPase -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 22486.82 Da        Isoelectric Point: 6.1074

>NTDB_id=28545 NGK_RS05005 WP_003688660.1 908777..909394(-) (recR) [Neisseria gonorrhoeae NCCP11945]
MNSKKQDAFQRLIGALKVLPNVGPKSAQRMAYHLLQQKRKEAEELVDALQTALRQVRHCARCNTFCEGGLCDICADETRD
GRRLMVVHMPADVSNIEAANCHDGLYFVLMGQINTALGMDVSAIALDRLAQRLDGGEIEEIIIATAFTAEGNATAYVLSE
FFKNLPYKVSRLSQGIPLGGELEYVDAGTLAQAVYERRLIKEGGA

Nucleotide


Download         Length: 618 bp        

>NTDB_id=28545 NGK_RS05005 WP_003688660.1 908777..909394(-) (recR) [Neisseria gonorrhoeae NCCP11945]
ATGAATTCCAAAAAACAGGATGCATTCCAACGCCTGATCGGTGCGCTGAAAGTATTGCCCAACGTCGGGCCGAAATCGGC
ACAGCGGATGGCGTACCATCTGTTGCAGCAAAAGCGCAAAGAGGCTGAAGAGCTGGTGGATGCCTTACAGACGGCATTGA
GGCAGGTTCGCCATTGCGCAAGGTGCAATACATTTTGCGAAGGCGGATTGTGCGATATTTGTGCCGATGAAACACGCGAC
GGGCGGCGGCTGATGGTGGTGCATATGCCTGCCGACGTGTCGAATATAGAAGCGGCAAACTGCCACGACGGGCTGTATTT
CGTCCTGATGGGGCAAATCAATACGGCATTGGGAATGGACGTATCCGCCATCGCATTGGACAGGCTGGCGCAACGGCTGG
ACGGCGGGGAAATCGAAGAAATCATTATCGCGACCGCCTTTACCGCAGAAGGCAATGCCACAGCGTATGTCCTGTCCGAG
TTTTTCAAAAACCTGCCTTACAAGGTCAGCAGGCTGTCGCAGGGCATCCCATTGGGCGGCGAATTGGAATATGTCGATGC
GGGAACGCTGGCGCAGGCGGTGTACGAACGGCGTCTGATTAAAGAAGGCGGGGCGTAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(83-172)

RecR protein (RecR_ZnF)

(41-80)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

38.191

97.073

0.371

Multiple sequence alignment