Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   DA379_RS06165 Genome accession   NZ_CP028441
Coordinates   1192869..1193648 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain 131-4     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1187869..1198648
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DA379_RS06145 trmFO 1188556..1189863 (+) 1308 WP_003154273.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  DA379_RS06150 xerC 1189933..1190850 (+) 918 WP_003154270.1 tyrosine recombinase XerC -
  DA379_RS06155 hslV 1190866..1191411 (+) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  DA379_RS06160 hslU 1191428..1192831 (+) 1404 WP_003154265.1 HslU--HslV peptidase ATPase subunit -
  DA379_RS06165 codY 1192869..1193648 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  DA379_RS06170 flgB 1194002..1194391 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  DA379_RS06175 flgC 1194391..1194843 (+) 453 WP_003154259.1 flagellar basal body rod protein FlgC -
  DA379_RS06180 fliE 1194854..1195174 (+) 321 WP_003154258.1 flagellar hook-basal body complex protein FliE -
  DA379_RS06185 fliF 1195217..1196827 (+) 1611 WP_003154257.1 flagellar basal-body MS-ring/collar protein FliF -
  DA379_RS06190 fliG 1196840..1197856 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  DA379_RS06195 fliH 1197849..1198604 (+) 756 WP_003154255.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=285068 DA379_RS06165 WP_003154263.1 1192869..1193648(+) (codY) [Bacillus velezensis strain 131-4]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=285068 DA379_RS06165 WP_003154263.1 1192869..1193648(+) (codY) [Bacillus velezensis strain 131-4]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCAGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTGATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAATGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCATTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471

Multiple sequence alignment