Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   DA378_RS03205 Genome accession   NZ_CP028440
Coordinates   758812..759591 (-) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain J7-1     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 753812..764591
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DA378_RS03175 fliH 753856..754611 (-) 756 WP_003154255.1 flagellar assembly protein FliH -
  DA378_RS03180 fliG 754604..755620 (-) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  DA378_RS03185 fliF 755633..757243 (-) 1611 WP_003154257.1 flagellar basal-body MS-ring/collar protein FliF -
  DA378_RS03190 fliE 757286..757606 (-) 321 WP_003154258.1 flagellar hook-basal body complex protein FliE -
  DA378_RS03195 flgC 757617..758069 (-) 453 WP_003154259.1 flagellar basal body rod protein FlgC -
  DA378_RS03200 flgB 758069..758458 (-) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  DA378_RS03205 codY 758812..759591 (-) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  DA378_RS03210 hslU 759629..761032 (-) 1404 WP_003154265.1 HslU--HslV peptidase ATPase subunit -
  DA378_RS03215 hslV 761049..761594 (-) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  DA378_RS03220 xerC 761610..762527 (-) 918 WP_003154270.1 tyrosine recombinase XerC -
  DA378_RS03225 trmFO 762597..763904 (-) 1308 WP_003154273.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=284974 DA378_RS03205 WP_003154263.1 758812..759591(-) (codY) [Bacillus velezensis strain J7-1]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=284974 DA378_RS03205 WP_003154263.1 758812..759591(-) (codY) [Bacillus velezensis strain J7-1]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCAGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTGATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAATGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCATTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471

Multiple sequence alignment