Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   DA377_RS12175 Genome accession   NZ_CP028439
Coordinates   2447528..2448307 (-) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain 8-2     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2442528..2453307
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DA377_RS12145 fliH 2442572..2443327 (-) 756 WP_003154255.1 flagellar assembly protein FliH -
  DA377_RS12150 fliG 2443320..2444336 (-) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  DA377_RS12155 fliF 2444349..2445959 (-) 1611 WP_003154257.1 flagellar basal-body MS-ring/collar protein FliF -
  DA377_RS12160 fliE 2446002..2446322 (-) 321 WP_003154258.1 flagellar hook-basal body complex protein FliE -
  DA377_RS12165 flgC 2446333..2446785 (-) 453 WP_003154259.1 flagellar basal body rod protein FlgC -
  DA377_RS12170 flgB 2446785..2447174 (-) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  DA377_RS12175 codY 2447528..2448307 (-) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  DA377_RS12180 hslU 2448345..2449748 (-) 1404 WP_003154265.1 HslU--HslV peptidase ATPase subunit -
  DA377_RS12185 hslV 2449765..2450310 (-) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  DA377_RS12190 xerC 2450326..2451243 (-) 918 WP_003154270.1 tyrosine recombinase XerC -
  DA377_RS12195 trmFO 2451313..2452620 (-) 1308 WP_003154273.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=284941 DA377_RS12175 WP_003154263.1 2447528..2448307(-) (codY) [Bacillus velezensis strain 8-2]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=284941 DA377_RS12175 WP_003154263.1 2447528..2448307(-) (codY) [Bacillus velezensis strain 8-2]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCAGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTGATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAATGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCATTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471

Multiple sequence alignment