Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   DA376_RS08320 Genome accession   NZ_CP028437
Coordinates   1633064..1633843 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain DR-08     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1628064..1638843
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DA376_RS08300 (DA376_08300) trmFO 1628751..1630058 (+) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  DA376_RS08305 (DA376_08305) xerC 1630128..1631045 (+) 918 WP_007409774.1 tyrosine recombinase XerC -
  DA376_RS08310 (DA376_08310) hslV 1631061..1631606 (+) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  DA376_RS08315 (DA376_08315) hslU 1631623..1633026 (+) 1404 WP_007611413.1 HslU--HslV peptidase ATPase subunit -
  DA376_RS08320 (DA376_08320) codY 1633064..1633843 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  DA376_RS08325 (DA376_08325) flgB 1634197..1634586 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  DA376_RS08330 (DA376_08330) flgC 1634586..1635038 (+) 453 WP_007409776.1 flagellar basal body rod protein FlgC -
  DA376_RS08335 (DA376_08335) fliE 1635049..1635369 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  DA376_RS08340 (DA376_08340) fliF 1635412..1637022 (+) 1611 WP_032874889.1 flagellar basal-body MS-ring/collar protein FliF -
  DA376_RS08345 (DA376_08345) fliG 1637035..1638051 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  DA376_RS08350 (DA376_08350) fliH 1638044..1638799 (+) 756 WP_032874891.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=284851 DA376_RS08320 WP_003154263.1 1633064..1633843(+) (codY) [Bacillus velezensis strain DR-08]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=284851 DA376_RS08320 WP_003154263.1 1633064..1633843(+) (codY) [Bacillus velezensis strain DR-08]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTAGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471

Multiple sequence alignment