Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   APP7_RS02640 Genome accession   NC_010939
Coordinates   567652..568992 (+) Length   446 a.a.
NCBI ID   WP_012478378.1    Uniprot ID   -
Organism   Actinobacillus pleuropneumoniae serovar 7 str. AP76     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 562652..573992
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  APP7_RS02615 (APP7_0508) msrB 563115..563510 (-) 396 WP_005620040.1 peptide-methionine (R)-S-oxide reductase MsrB -
  APP7_RS02620 (APP7_0509) gap 563733..564737 (+) 1005 WP_005620042.1 type I glyceraldehyde-3-phosphate dehydrogenase -
  APP7_RS02625 (APP7_0510) - 564933..565985 (+) 1053 WP_005607179.1 rod shape-determining protein -
  APP7_RS02630 (APP7_0511) mreC 566102..567151 (+) 1050 WP_005600525.1 rod shape-determining protein MreC -
  APP7_RS02635 (APP7_0512) mreD 567151..567639 (+) 489 WP_005596506.1 rod shape-determining protein MreD -
  APP7_RS02640 (APP7_0513) rarA 567652..568992 (+) 1341 WP_012478378.1 replication-associated recombination protein A Machinery gene
  APP7_RS02645 (APP7_0514) znuB 569073..569858 (+) 786 WP_005616958.1 zinc ABC transporter permease subunit ZnuB -
  APP7_RS02650 (APP7_0515) - 570037..570834 (+) 798 WP_005596509.1 class II glutamine amidotransferase -
  APP7_RS02655 (APP7_0516) - 570914..571990 (-) 1077 WP_005619029.1 homoserine O-acetyltransferase -
  APP7_RS02660 (APP7_0517) - 572282..572971 (+) 690 WP_005611655.1 ElyC/SanA/YdcF family protein -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 50283.94 Da        Isoelectric Point: 6.8308

>NTDB_id=28475 APP7_RS02640 WP_012478378.1 567652..568992(+) (rarA) [Actinobacillus pleuropneumoniae serovar 7 str. AP76]
MSSLSFDFSEDFRPLPARMRPRTLAEYIGQAHLIGEGKPLRRAIEAGHSHSMIFWGPPGTGKTTLAEIIAHHFDAEVERL
SAVTSGVKEIREAIERAKLNRQTGRRTLLFVDEVHRFNKSQQDAFLPHIEDGTIIFIGATTENPSFELNNALLSRAKIYI
LKPLQAVEIAQVLTNALYDKERGLGNESYYIEDNVIELLADYVNGDARFALNCLELMSDMAEISPQGKHLNKALLAEVLG
ERQTRFDKGGDRYYDLISALHKSVRGSSPDGALYWYARILTAGGDPLYVARRLLAIASEDIGNADPRAMQVAINAWDCYT
RVGAYEGERAIAQAVIYLAVAPKSNAVYNAFNEAKRLAKEGKDYDVPEHLRNAPTKLMKSLGYGEEYRYAHHEPNAYAAG
ENYFPPELKDTVFYHPTERGMEKQIKEKLQWLKAQDQSSLQQRYKR

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=28475 APP7_RS02640 WP_012478378.1 567652..568992(+) (rarA) [Actinobacillus pleuropneumoniae serovar 7 str. AP76]
ATGAGTAGTTTGTCCTTTGATTTTTCAGAAGATTTTAGACCGCTGCCCGCCAGAATGCGTCCACGCACACTGGCGGAGTA
TATCGGGCAAGCTCATCTTATCGGAGAAGGTAAACCGCTACGCCGCGCGATAGAAGCGGGACATTCTCATTCCATGATCT
TCTGGGGGCCTCCCGGCACCGGTAAAACGACGTTAGCGGAAATTATCGCGCATCATTTTGATGCGGAAGTGGAACGCCTT
TCTGCGGTTACCAGCGGTGTGAAGGAAATCAGAGAAGCGATAGAGCGGGCTAAGCTCAATCGACAAACCGGCAGACGAAC
ATTACTTTTTGTCGATGAAGTACATCGCTTTAATAAAAGCCAACAAGACGCTTTTCTGCCGCATATTGAAGACGGCACCA
TTATTTTTATCGGTGCGACAACCGAGAATCCATCCTTTGAATTAAATAACGCCTTACTTTCCCGTGCGAAAATCTATATT
TTAAAACCGTTGCAAGCGGTTGAAATTGCACAAGTTTTAACTAATGCGCTTTACGATAAAGAACGAGGCTTAGGTAATGA
AAGCTATTACATCGAAGATAATGTGATTGAATTACTCGCCGATTACGTAAATGGGGATGCGAGATTCGCTTTAAATTGCT
TAGAACTGATGTCGGATATGGCAGAGATTTCCCCTCAAGGAAAACACCTGAATAAAGCATTGTTAGCCGAAGTATTGGGA
GAGCGACAAACTCGATTTGATAAAGGCGGCGATCGTTACTATGATTTAATCTCGGCATTGCATAAGTCGGTACGGGGCTC
ATCACCGGACGGCGCGTTGTATTGGTATGCGAGAATTTTAACCGCAGGCGGCGATCCTTTGTATGTTGCGCGCCGATTAT
TGGCAATCGCTTCGGAAGATATTGGCAATGCTGACCCTAGAGCGATGCAAGTTGCGATTAACGCTTGGGATTGCTATACC
CGAGTCGGGGCTTACGAAGGTGAAAGAGCGATTGCGCAAGCGGTGATTTATTTGGCGGTTGCGCCTAAAAGTAATGCGGT
TTATAACGCTTTCAATGAAGCGAAACGTCTTGCGAAAGAGGGCAAAGATTACGATGTACCGGAACATCTGCGCAATGCAC
CGACTAAGTTGATGAAATCGTTAGGTTATGGTGAAGAGTATCGTTACGCACATCATGAACCGAACGCTTATGCCGCCGGC
GAAAACTACTTCCCGCCGGAATTAAAAGATACGGTATTTTATCATCCGACGGAACGAGGTATGGAAAAGCAAATTAAGGA
AAAATTGCAGTGGCTAAAAGCACAAGATCAATCCAGCTTGCAACAACGTTACAAGCGGTAA

Domains

Predicted by InterProScan.

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(19-143)

MgsA AAA+ ATPase C terminal (MgsA_C)

(266-432)

AAA C-terminal domain (AAA_assoc_2)

(186-265)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

41.135

94.843

0.39

Multiple sequence alignment