Detailed information NTG0284588

Bioinformatically predicted

Overview

• Name: comYH
• Type: Machinery gene
• Locus tag: C9I44_RS09905
• Genome accession: NZ_CP028386
• Coordinates: 1924992..1925927 (-)
• Length: 311 a.a.
• NCBI ID: WP_003133316.1
• Uniprot ID: A0A1I4GTA7
• Organism: Lactococcus garvieae strain IBB3403
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1919992..1930927

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C9I44_RS09880 (C9I44_09830)	-	1920040..1920900 (-)	861	WP_003133325.1	S1 RNA-binding domain-containing protein	-
C9I44_RS09885 (C9I44_09835)	frr	1921008..1921565 (-)	558	WP_003133324.1	ribosome recycling factor	-
C9I44_RS09890 (C9I44_09840)	pyrH	1921595..1922311 (-)	717	WP_003133322.1	UMP kinase	-
C9I44_RS09895 (C9I44_09845)	-	1922402..1923595 (-)	1194	WP_003133320.1	acetate kinase	-
C9I44_RS09900 (C9I44_09850)	-	1923714..1924907 (-)	1194	WP_003133318.1	acetate kinase	-
C9I44_RS09905 (C9I44_09855)	comYH	1924992..1925927 (-)	936	WP_003133316.1	class I SAM-dependent methyltransferase	Machinery gene
C9I44_RS09910 (C9I44_09860)	-	1925973..1926203 (-)	231	WP_003133314.1	DUF3165 family protein	-
C9I44_RS09915 (C9I44_09865)	typA	1926278..1928119 (-)	1842	WP_003133313.1	translational GTPase TypA	-
C9I44_RS09920 (C9I44_09870)	-	1928440..1928652 (+)	213	WP_003133311.1	YqgQ family protein	-
C9I44_RS09925 (C9I44_09875)	-	1928645..1929610 (+)	966	WP_003133309.1	ROK family glucokinase	-
C9I44_RS09930 (C9I44_09880)	-	1929630..1930010 (+)	381	WP_003133308.1	rhodanese-like domain-containing protein	-
C9I44_RS09935 (C9I44_09885)	-	1930050..1930496 (-)	447	WP_003133306.1	Dps family protein	-

Sequence

Protein

• Length: 311 a.a.
• Molecular weight: 35124.17 Da
• Isoelectric Point: 4.6693

>NTDB_id=284588 C9I44_RS09905 WP_003133316.1 1924992..1925927(-) (comYH) [Lactococcus garvieae strain IBB3403]
MDIEKIEKAFGLVLENIMAIQAELLTDFYDAFVEQNAAYLGALEFASLTKENNDKVRSMNLTKSEWQKLFQFVLLQGSRV
APMQANHNLTPDSIGFIFNFIIEELHKERKIRVLEFGSGTGNLAETLLVHMQKEVDYVGFEVDDLLLDLSASMSEVMGTE
ASFLQIDAVKPQPLESVDVVMSDLPVGYYPDDDTARHFQVHDKSEHTYVHHLMIEQSFKYLKESGFALFLAPDNLLTSAQ
SEFLKAWIKEHAHVAAVITLPSSLFKGAGKSIYLLSKNQTNTPTFVYPLADLADRSILQEFMSEFVKNVKI

Nucleotide

• Length: 936 bp

>NTDB_id=284588 C9I44_RS09905 WP_003133316.1 1924992..1925927(-) (comYH) [Lactococcus garvieae strain IBB3403]
ATGGATATAGAGAAAATCGAAAAAGCCTTTGGATTGGTTCTTGAAAATATTATGGCAATTCAAGCGGAGCTCTTGACGGA
TTTTTATGATGCTTTTGTGGAACAAAATGCAGCTTACTTAGGCGCTTTAGAGTTTGCATCTCTGACGAAGGAAAATAATG
ATAAGGTTCGTTCAATGAACCTCACGAAAAGTGAGTGGCAAAAGCTGTTTCAATTTGTCTTGCTTCAAGGGTCACGTGTC
GCACCAATGCAAGCAAATCATAATTTAACACCAGATTCTATTGGGTTTATCTTTAATTTCATCATTGAAGAGTTGCACAA
AGAAAGAAAGATTCGTGTACTAGAATTTGGCTCAGGAACAGGGAATTTAGCGGAAACGCTCTTGGTTCATATGCAAAAAG
AAGTAGACTATGTTGGTTTTGAAGTAGATGACCTCTTGTTGGATTTGTCCGCTTCAATGTCCGAAGTCATGGGAACAGAA
GCAAGTTTTCTCCAAATTGACGCCGTGAAACCACAGCCCTTGGAGTCTGTAGATGTTGTGATGAGTGATCTCCCGGTTGG
TTATTATCCAGACGATGACACTGCTCGCCATTTTCAAGTGCATGACAAATCAGAACATACCTATGTGCACCACTTAATGA
TTGAGCAATCCTTTAAGTATCTGAAGGAGAGTGGTTTTGCGCTCTTCTTAGCTCCAGATAATCTTTTGACAAGTGCACAG
TCAGAATTTTTGAAGGCTTGGATTAAAGAACATGCACATGTTGCTGCAGTCATTACATTGCCTTCATCACTCTTTAAAGG
TGCAGGAAAATCGATTTATTTATTAAGTAAAAACCAAACAAATACACCAACTTTTGTTTACCCCTTGGCTGATTTAGCAG
ACCGTTCTATTTTGCAAGAATTTATGTCTGAGTTTGTGAAAAATGTCAAGATTTGA

Domains

Predicted by InterproScan.

• N-6 DNA Methylase (N6_Mtase) (132-286)

3D structure

• AlphaFold DB: A0A1I4GTA7

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYH	Streptococcus mutans UA140	49.677	99.678	0.495
comYH	Streptococcus mutans UA159	49.355	99.678	0.492