Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   C9I44_RS00380 Genome accession   NZ_CP028386
Coordinates   76946..77737 (+) Length   263 a.a.
NCBI ID   WP_003133634.1    Uniprot ID   -
Organism   Lactococcus garvieae strain IBB3403     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 71946..82737
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C9I44_RS00350 (C9I44_00345) rpmH 72644..72778 (+) 135 WP_003135255.1 50S ribosomal protein L34 -
  C9I44_RS00355 (C9I44_00350) - 72927..73838 (+) 912 WP_003133628.1 aldo/keto reductase -
  C9I44_RS00360 (C9I44_00355) - 74039..74305 (+) 267 WP_003133629.1 IreB family regulatory phosphoprotein -
  C9I44_RS00365 (C9I44_00360) ruvX 74305..74733 (+) 429 WP_003133630.1 Holliday junction resolvase RuvX -
  C9I44_RS00370 (C9I44_00365) - 74748..75071 (+) 324 WP_003133632.1 DUF1292 domain-containing protein -
  C9I44_RS00375 (C9I44_00370) - 75211..76809 (+) 1599 WP_003133633.1 hypothetical protein -
  C9I44_RS00380 (C9I44_00375) codY 76946..77737 (+) 792 WP_003133634.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  C9I44_RS00385 (C9I44_00380) gatC 77882..78187 (+) 306 WP_003133635.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  C9I44_RS00390 (C9I44_00385) gatA 78187..79659 (+) 1473 WP_003133636.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -
  C9I44_RS00395 (C9I44_00390) gatB 79661..81094 (+) 1434 WP_003133637.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  C9I44_RS00400 (C9I44_00395) - 81107..82462 (-) 1356 WP_003133638.1 MATE family efflux transporter -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 29180.60 Da        Isoelectric Point: 4.7260

>NTDB_id=284548 C9I44_RS00380 WP_003133634.1 76946..77737(+) (codY) [Lactococcus garvieae strain IBB3403]
MATLLEKTRKITSVLQDGVTDLKQELPYDNMTERLANVIDCNACIIDTKGKLLGYSLPYEINNDRVNELFHVQKQLPEDY
ARAAIRIYDTLANITINEPLSVFPAELLGEYPNGLTTCAPIYGSGMRLGTFILWRTDGKFSDDDLVLAELATTVIGVQLS
NLKLEQMEENIRKDTMANMAVNTLSYSEMKAVKAILEELDGEEGHVIASVIADKIGITRSVIVNALRKLESAGVIESRSL
GMKGTYLKVLNQGLFTKLEGRNF

Nucleotide


Download         Length: 792 bp        

>NTDB_id=284548 C9I44_RS00380 WP_003133634.1 76946..77737(+) (codY) [Lactococcus garvieae strain IBB3403]
GTGGCTACTTTATTAGAAAAAACCCGCAAAATTACATCAGTTCTGCAAGATGGAGTAACTGATTTAAAGCAGGAGTTACC
CTATGATAACATGACAGAGCGTTTAGCCAACGTGATTGACTGTAATGCTTGTATCATTGATACAAAAGGGAAACTTTTGG
GCTATTCACTGCCATACGAAATTAACAACGATCGTGTTAATGAACTTTTCCATGTACAAAAACAATTGCCAGAAGATTAT
GCACGTGCGGCTATCCGTATCTATGACACTTTAGCAAATATCACGATTAACGAACCTTTGTCAGTATTTCCTGCAGAACT
TTTAGGTGAGTATCCAAATGGTTTAACAACATGTGCACCAATCTATGGTAGTGGTATGCGCTTGGGAACATTTATCTTAT
GGCGTACAGACGGGAAATTCAGTGATGATGACCTTGTGCTTGCAGAACTTGCAACAACAGTTATCGGTGTTCAACTTTCC
AATCTTAAACTTGAACAAATGGAAGAAAATATCCGTAAAGACACGATGGCCAATATGGCAGTCAATACACTTTCATATTC
AGAAATGAAGGCTGTGAAAGCAATTCTTGAAGAACTTGATGGTGAAGAAGGACACGTTATCGCTTCAGTCATTGCCGATA
AGATTGGCATTACCCGTTCAGTAATCGTTAATGCACTGCGTAAGCTTGAATCTGCCGGTGTTATTGAAAGTCGTTCGTTG
GGAATGAAAGGAACTTACCTCAAAGTTCTCAACCAAGGTTTGTTTACAAAACTTGAAGGCCGTAACTTCTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(202-259)

CodY GAF-like domain (CodY)

(3-183)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

82.129

100

0.821
  codY Bacillus subtilis subsp. subtilis str. 168

49.609

97.338

0.483

Multiple sequence alignment