Detailed information
Bioinformatically predicted
Overview
| Name | rarA | Type | Machinery gene |
| Locus tag | CLIM_RS04190 | Genome accession | NC_010803 |
| Coordinates | 918633..919982 (+) | Length | 449 a.a. |
| NCBI ID | WP_012465794.1 | Uniprot ID | - |
| Organism | Chlorobium limicola DSM 245 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 913633..924982
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CLIM_RS04170 (Clim_0832) | - | 913838..914650 (+) | 813 | WP_223294136.1 | L,D-transpeptidase | - |
| CLIM_RS04175 (Clim_0833) | tpx | 914920..915420 (+) | 501 | WP_041465876.1 | thiol peroxidase | - |
| CLIM_RS04180 (Clim_0834) | - | 915887..917839 (+) | 1953 | WP_012465792.1 | alpha-amylase family glycosyl hydrolase | - |
| CLIM_RS04185 (Clim_0835) | - | 917973..918632 (+) | 660 | WP_012465793.1 | riboflavin synthase | - |
| CLIM_RS04190 (Clim_0836) | rarA | 918633..919982 (+) | 1350 | WP_012465794.1 | replication-associated recombination protein A | Machinery gene |
| CLIM_RS04195 (Clim_0837) | - | 920076..921464 (+) | 1389 | WP_012465795.1 | TolC family protein | - |
| CLIM_RS04200 (Clim_0838) | - | 921461..922411 (-) | 951 | WP_012465796.1 | bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG | - |
| CLIM_RS04205 (Clim_0839) | - | 922429..922947 (-) | 519 | WP_012465797.1 | HIT domain-containing protein | - |
| CLIM_RS04220 (Clim_0840) | - | 923278..923871 (+) | 594 | WP_012465798.1 | hypothetical protein | - |
| CLIM_RS04225 (Clim_0841) | - | 923853..924908 (+) | 1056 | WP_012465799.1 | ferrochelatase | - |
Sequence
Protein
Download Length: 449 a.a. Molecular weight: 49534.50 Da Isoelectric Point: 6.4388
>NTDB_id=28445 CLIM_RS04190 WP_012465794.1 918633..919982(+) (rarA) [Chlorobium limicola DSM 245]
MSGPDLFQPDLFGLPNPETVSTPEQYKPLAERVRPRTLDDLSGQAHLVGKDGPLRSFLESGRLPSMILWGPPGSGKTTLA
EICATSLHYRFEQLSAIDAGVKEVRKALDGARQARRSGQRTILFIDEIHRFNKAQQDTLLHAIEQGLITLIGATTENPSF
EVNGALLSRMQVYILQPLSEQDIEAVIRRAVACDVIMKEKRLVLEDPAFVLQFAGGDARKALNAVEAAAALVPLESSEVV
LTRELLERALQHKAPHYDKGAEAHYDTISAFIKSMRGSDPDAALFWLARMIEGGEDPLFIARRMVIFASEDIGNADPFAL
SLAVSVFQAVQMIGLPEARINLAQGVTYLAGSPKSNASYEGINEAMRAAKAFQDAGVPLHLRNAPTTLMKTVGYGEGYRY
PHQYPGHFVEQHYFPEGVPTQLFYRPSDSGREKAIDERLRGLWRGRYPA
MSGPDLFQPDLFGLPNPETVSTPEQYKPLAERVRPRTLDDLSGQAHLVGKDGPLRSFLESGRLPSMILWGPPGSGKTTLA
EICATSLHYRFEQLSAIDAGVKEVRKALDGARQARRSGQRTILFIDEIHRFNKAQQDTLLHAIEQGLITLIGATTENPSF
EVNGALLSRMQVYILQPLSEQDIEAVIRRAVACDVIMKEKRLVLEDPAFVLQFAGGDARKALNAVEAAAALVPLESSEVV
LTRELLERALQHKAPHYDKGAEAHYDTISAFIKSMRGSDPDAALFWLARMIEGGEDPLFIARRMVIFASEDIGNADPFAL
SLAVSVFQAVQMIGLPEARINLAQGVTYLAGSPKSNASYEGINEAMRAAKAFQDAGVPLHLRNAPTTLMKTVGYGEGYRY
PHQYPGHFVEQHYFPEGVPTQLFYRPSDSGREKAIDERLRGLWRGRYPA
Nucleotide
Download Length: 1350 bp
>NTDB_id=28445 CLIM_RS04190 WP_012465794.1 918633..919982(+) (rarA) [Chlorobium limicola DSM 245]
ATGAGTGGCCCCGATCTTTTTCAGCCCGATCTGTTCGGGTTGCCGAATCCCGAAACGGTAAGCACTCCTGAACAGTATAA
ACCGCTTGCCGAGCGGGTACGTCCTCGAACGCTCGACGATCTTTCAGGTCAGGCACATCTTGTCGGGAAGGATGGCCCCC
TGCGCAGTTTTCTTGAAAGCGGCAGGCTTCCTTCGATGATTTTATGGGGTCCTCCGGGTTCCGGTAAAACCACTCTTGCC
GAAATCTGCGCAACCTCGTTGCATTATCGCTTCGAACAGCTTTCGGCCATCGATGCCGGGGTCAAGGAGGTGAGAAAAGC
GCTCGATGGCGCTCGACAGGCCCGGCGTTCAGGTCAGCGAACCATTCTCTTTATCGATGAAATTCACCGTTTCAACAAGG
CGCAGCAGGATACGCTGCTGCATGCCATCGAGCAGGGCTTGATTACTCTCATTGGCGCGACAACCGAGAACCCCTCTTTC
GAGGTCAATGGAGCGCTGCTCAGCAGAATGCAGGTCTATATACTTCAACCGCTTTCAGAACAGGATATCGAGGCGGTGAT
CCGGCGGGCCGTGGCTTGTGATGTCATCATGAAGGAAAAGCGGCTGGTGCTTGAAGACCCCGCTTTTGTTCTGCAGTTTG
CCGGTGGCGATGCCCGCAAGGCACTCAATGCCGTAGAAGCAGCCGCAGCGCTCGTGCCTTTGGAGAGCAGTGAGGTTGTG
CTGACACGCGAACTGCTTGAACGGGCACTGCAGCATAAGGCGCCTCATTACGATAAAGGTGCAGAAGCACACTACGATAC
CATATCGGCTTTTATCAAATCCATGAGAGGGAGTGACCCGGATGCGGCCCTGTTCTGGCTTGCGAGAATGATCGAAGGGG
GTGAAGATCCGCTTTTCATTGCCCGTCGGATGGTGATTTTTGCCAGTGAGGATATCGGTAACGCCGATCCGTTTGCACTC
TCTCTGGCGGTTTCGGTGTTTCAGGCGGTGCAGATGATCGGTCTGCCCGAAGCCCGGATCAATCTTGCCCAGGGGGTGAC
CTATCTTGCGGGATCTCCGAAATCAAATGCAAGCTATGAGGGTATCAACGAGGCCATGCGGGCAGCGAAAGCCTTTCAGG
ACGCAGGTGTGCCGCTCCATCTGCGTAATGCGCCGACCACGCTTATGAAAACAGTCGGATATGGCGAGGGGTACCGTTAC
CCTCACCAGTATCCGGGACATTTTGTCGAACAGCACTATTTCCCCGAAGGAGTGCCGACACAGCTTTTTTACCGACCCTC
CGATTCAGGTCGCGAAAAGGCCATTGACGAAAGGTTGCGGGGGTTATGGCGGGGACGTTACCCGGCATGA
ATGAGTGGCCCCGATCTTTTTCAGCCCGATCTGTTCGGGTTGCCGAATCCCGAAACGGTAAGCACTCCTGAACAGTATAA
ACCGCTTGCCGAGCGGGTACGTCCTCGAACGCTCGACGATCTTTCAGGTCAGGCACATCTTGTCGGGAAGGATGGCCCCC
TGCGCAGTTTTCTTGAAAGCGGCAGGCTTCCTTCGATGATTTTATGGGGTCCTCCGGGTTCCGGTAAAACCACTCTTGCC
GAAATCTGCGCAACCTCGTTGCATTATCGCTTCGAACAGCTTTCGGCCATCGATGCCGGGGTCAAGGAGGTGAGAAAAGC
GCTCGATGGCGCTCGACAGGCCCGGCGTTCAGGTCAGCGAACCATTCTCTTTATCGATGAAATTCACCGTTTCAACAAGG
CGCAGCAGGATACGCTGCTGCATGCCATCGAGCAGGGCTTGATTACTCTCATTGGCGCGACAACCGAGAACCCCTCTTTC
GAGGTCAATGGAGCGCTGCTCAGCAGAATGCAGGTCTATATACTTCAACCGCTTTCAGAACAGGATATCGAGGCGGTGAT
CCGGCGGGCCGTGGCTTGTGATGTCATCATGAAGGAAAAGCGGCTGGTGCTTGAAGACCCCGCTTTTGTTCTGCAGTTTG
CCGGTGGCGATGCCCGCAAGGCACTCAATGCCGTAGAAGCAGCCGCAGCGCTCGTGCCTTTGGAGAGCAGTGAGGTTGTG
CTGACACGCGAACTGCTTGAACGGGCACTGCAGCATAAGGCGCCTCATTACGATAAAGGTGCAGAAGCACACTACGATAC
CATATCGGCTTTTATCAAATCCATGAGAGGGAGTGACCCGGATGCGGCCCTGTTCTGGCTTGCGAGAATGATCGAAGGGG
GTGAAGATCCGCTTTTCATTGCCCGTCGGATGGTGATTTTTGCCAGTGAGGATATCGGTAACGCCGATCCGTTTGCACTC
TCTCTGGCGGTTTCGGTGTTTCAGGCGGTGCAGATGATCGGTCTGCCCGAAGCCCGGATCAATCTTGCCCAGGGGGTGAC
CTATCTTGCGGGATCTCCGAAATCAAATGCAAGCTATGAGGGTATCAACGAGGCCATGCGGGCAGCGAAAGCCTTTCAGG
ACGCAGGTGTGCCGCTCCATCTGCGTAATGCGCCGACCACGCTTATGAAAACAGTCGGATATGGCGAGGGGTACCGTTAC
CCTCACCAGTATCCGGGACATTTTGTCGAACAGCACTATTTCCCCGAAGGAGTGCCGACACAGCTTTTTTACCGACCCTC
CGATTCAGGTCGCGAAAAGGCCATTGACGAAAGGTTGCGGGGGTTATGGCGGGGACGTTACCCGGCATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| rarA | Bacillus subtilis subsp. subtilis str. 168 |
41.951 |
91.314 |
0.383 |