Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   C9888_RS08505 Genome accession   NZ_CP028375
Coordinates   1666087..1666866 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain W1     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1661087..1671866
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C9888_RS08485 trmFO 1661774..1663081 (+) 1308 WP_014417766.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  C9888_RS08490 xerC 1663151..1664068 (+) 918 WP_007409774.1 tyrosine recombinase XerC -
  C9888_RS08495 hslV 1664084..1664629 (+) 546 WP_014417767.1 ATP-dependent protease subunit HslV -
  C9888_RS08500 hslU 1664637..1666049 (+) 1413 WP_254894347.1 HslU--HslV peptidase ATPase subunit -
  C9888_RS08505 codY 1666087..1666866 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  C9888_RS08510 flgB 1667220..1667609 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  C9888_RS08515 flgC 1667609..1668061 (+) 453 WP_003154259.1 flagellar basal body rod protein FlgC -
  C9888_RS08520 fliE 1668072..1668392 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  C9888_RS08525 fliF 1668435..1670045 (+) 1611 WP_014417768.1 flagellar basal-body MS-ring/collar protein FliF -
  C9888_RS08530 fliG 1670058..1671074 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  C9888_RS08535 fliH 1671067..1671822 (+) 756 WP_014417769.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=284443 C9888_RS08505 WP_003154263.1 1666087..1666866(+) (codY) [Bacillus velezensis strain W1]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=284443 C9888_RS08505 WP_003154263.1 1666087..1666866(+) (codY) [Bacillus velezensis strain W1]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATCACGC
GTTCAGTCATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471

Multiple sequence alignment