Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   C7Y67_RS15595 Genome accession   NZ_CP028342
Coordinates   3150299..3151024 (+) Length   241 a.a.
NCBI ID   WP_025545500.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus isolate R13     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3145299..3156024
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7Y67_RS15580 (C7Y67_15575) - 3146402..3148723 (+) 2322 WP_108745114.1 Tex family protein -
  C7Y67_RS15585 (C7Y67_15580) - 3148859..3149323 (-) 465 WP_108745115.1 ATP-dependent Lon protease -
  C7Y67_RS15590 (C7Y67_15585) bioH 3149447..3150214 (-) 768 WP_021486851.1 pimeloyl-ACP methyl ester esterase BioH -
  C7Y67_RS15595 (C7Y67_15590) comF 3150299..3151024 (+) 726 WP_025545500.1 amidophosphoribosyltransferase Machinery gene
  C7Y67_RS15600 (C7Y67_15595) nfuA 3151122..3151706 (+) 585 WP_005458964.1 Fe-S biogenesis protein NfuA -
  C7Y67_RS15605 (C7Y67_15600) nudE 3151927..3152496 (+) 570 WP_005459019.1 ADP compounds hydrolase NudE -
  C7Y67_RS15610 (C7Y67_15605) cysQ 3152537..3153364 (+) 828 WP_005458987.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  C7Y67_RS15615 (C7Y67_15610) - 3153651..3154412 (-) 762 WP_025545499.1 type II secretion system protein N -
  C7Y67_RS15620 (C7Y67_15615) - 3154414..3154905 (-) 492 WP_025545497.1 type II secretion system protein M -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27814.91 Da        Isoelectric Point: 8.8467

>NTDB_id=284273 C7Y67_RS15595 WP_025545500.1 3150299..3151024(+) (comF) [Vibrio parahaemolyticus isolate R13]
MLSHHWQNIMHRVLSSQCGLCRFPIQATDQPNALRWCDHCYQYLTPVKRCQRCGLSLKAEEANIESICGECLSEPPPWQR
LFTLGDYDFPLSREVQRFKDHGQTWHVRALTQLLAQRISTPAPLITTVPLHWQRYFYRGFNQSDILARHLAGHLNVRFDN
HVFRRVKHVQSQRGYKKSSREQNLKGAFTLNQPPKYNHVAIVDDVVTTGSTVRQLCHLLLEVGVETVDIYCICRTPAPGA
V

Nucleotide


Download         Length: 726 bp        

>NTDB_id=284273 C7Y67_RS15595 WP_025545500.1 3150299..3151024(+) (comF) [Vibrio parahaemolyticus isolate R13]
ATGTTATCTCATCACTGGCAAAACATCATGCATCGTGTGCTCAGCAGTCAATGCGGTTTATGTCGCTTCCCGATTCAGGC
TACCGATCAACCCAATGCGCTGCGTTGGTGTGATCACTGTTATCAATATCTTACGCCAGTAAAACGCTGCCAACGTTGTG
GATTGAGCTTAAAAGCAGAGGAAGCGAATATAGAGAGTATTTGCGGCGAGTGCCTCTCCGAGCCTCCACCGTGGCAACGG
CTATTTACCTTGGGAGACTATGATTTTCCGCTGTCTCGAGAAGTACAACGCTTCAAAGATCACGGACAAACATGGCATGT
TCGCGCTTTAACGCAATTGCTTGCCCAGCGCATTTCAACTCCCGCTCCGCTTATCACCACAGTGCCATTGCACTGGCAAC
GCTACTTTTATCGAGGCTTTAATCAGAGCGACATACTGGCGCGACATTTGGCTGGTCACCTTAATGTGAGGTTTGATAAT
CACGTGTTTCGCCGCGTAAAACACGTCCAGTCGCAGCGTGGGTACAAGAAATCCAGCCGAGAACAGAATTTAAAAGGCGC
TTTCACCTTAAATCAGCCACCAAAGTATAACCACGTCGCAATCGTAGATGATGTGGTCACGACGGGAAGCACGGTTCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAACCGTCGATATTTACTGCATCTGCAGAACCCCTGCTCCTGGTGCT
GTCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(146-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

72.199

100

0.722
  comF Vibrio cholerae strain A1552

49.16

98.755

0.485

Multiple sequence alignment