Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   CEP77_RS05180 Genome accession   NZ_CP028325
Coordinates   1063519..1063800 (+) Length   93 a.a.
NCBI ID   WP_001272690.1    Uniprot ID   -
Organism   Helicobacter pylori strain FDAARGOS_298     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1058519..1068800
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CEP77_RS05155 (CEP77_05150) groES 1059094..1059450 (-) 357 WP_000671927.1 co-chaperone GroES -
  CEP77_RS05165 (CEP77_05160) dnaG 1059728..1061407 (+) 1680 WP_108169539.1 DNA primase -
  CEP77_RS05170 (CEP77_05165) - 1061404..1062456 (+) 1053 WP_108169540.1 MnmA/TRMU family protein -
  CEP77_RS05175 (CEP77_05170) - 1062546..1063373 (+) 828 WP_108169541.1 DUF5718 family protein -
  CEP77_RS05180 (CEP77_05175) comB2 1063519..1063800 (+) 282 WP_001272690.1 TrbC/VirB2 family protein Machinery gene
  CEP77_RS05185 (CEP77_05180) comB3 1063800..1064063 (+) 264 WP_108169542.1 competence protein ComB Machinery gene
  CEP77_RS05190 (CEP77_05185) comB4 1064065..1066428 (+) 2364 WP_108169543.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  CEP77_RS05200 (CEP77_05195) - 1066747..1068087 (+) 1341 WP_162296840.1 COG3014 family protein -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10525.78 Da        Isoelectric Point: 9.1450

>NTDB_id=284133 CEP77_RS05180 WP_001272690.1 1063519..1063800(+) (comB2) [Helicobacter pylori strain FDAARGOS_298]
MSAHFLKIVFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=284133 CEP77_RS05180 WP_001272690.1 1063519..1063800(+) (comB2) [Helicobacter pylori strain FDAARGOS_298]
ATGTCCGCTCATTTTTTAAAAATCGTTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGTTTAGAGGGGTT
TTTTAACGCTCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTTTATTCTTT
AAGGCCCCGAGTTTAGCGAATTGGTTTATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(7-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

100

100

1

Multiple sequence alignment