Detailed information NTG0028406

Bioinformatically predicted

Overview

• Name: rarA
• Type: Machinery gene
• Locus tag: PGN_RS05770
• Genome accession: NC_010729
• Coordinates: 1334823..1336127 (+)
• Length: 434 a.a.
• NCBI ID: WP_010956212.1
• Uniprot ID: Q7MVG1
• Organism: Porphyromonas gingivalis ATCC 33277
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1329823..1341127

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PGN_RS05750 (PGN_1196)	murQ	1330785..1331609 (-)	825	WP_012458095.1	N-acetylmuramic acid 6-phosphate etherase	-
PGN_RS05755 (PGN_1197)	-	1331602..1332453 (-)	852	WP_012458096.1	BadF/BadG/BcrA/BcrD ATPase family protein	-
PGN_RS05760 (PGN_1198)	-	1332450..1333910 (-)	1461	WP_012458097.1	sodium:solute symporter	-
PGN_RS05765 (PGN_1199)	-	1334281..1334739 (+)	459	WP_012458098.1	histidinol phosphate phosphatase	-
PGN_RS05770 (PGN_1200)	rarA	1334823..1336127 (+)	1305	WP_010956212.1	replication-associated recombination protein A	Machinery gene
PGN_RS05775 (PGN_1201)	-	1336153..1336920 (+)	768	WP_039417154.1	tRNA1(Val) (adenine(37)-N6)-methyltransferase	-
PGN_RS05780 (PGN_1202)	rpoN	1336884..1338341 (-)	1458	WP_012458100.1	RNA polymerase factor sigma-54	-
PGN_RS05785 (PGN_1203)	murF	1338335..1339639 (-)	1305	WP_012458101.1	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase	-
PGN_RS05790 (PGN_1204)	panD	1339841..1340197 (+)	357	WP_010956218.1	aspartate 1-decarboxylase	-

Sequence

Protein

• Length: 434 a.a.
• Molecular weight: 48303.17 Da
• Isoelectric Point: 5.6527

>NTDB_id=28406 PGN_RS05770 WP_010956212.1 1334823..1336127(+) (rarA) [Porphyromonas gingivalis ATCC 33277]
MKQIPLAERMRPKTLADYVGQQHLIGSGAVLRQMIEQGQTPSMILWGPPGVGKTTLAEIIAHEVDAPFYTLSAVSSGVKE
VREVIADIESNRGNLFDKGGRAILFIDEIHRFSKSQQDSLLAAVERGIVTLIGATTENPSFEVIRPLLSRCQVYVLKPQS
DEDLLLLAHRAIDRDELLAAKHPVLEETEALLLYAGGDARKLLNILDLLATSEVEDRLVITNEKIRQRLQENPAAFDKGG
ELHYDIASAFIKSIRGSDPDAAIYWLARLIDGGEEPSFIARRLIISASEDIGLANPNAMLIAMACAEALDRIGWPEGRIP
LAEATIYLATSEKSNSAYLAIDSALEYVRQSGNLPVPLHLRNAPTRLMADLDYGKGYKYSHDFPEHFVSQQYLPDKAANT
SFWTPQMHTVHEAKLGERMKRWWKREKSQKDTAE

Nucleotide

• Length: 1305 bp

>NTDB_id=28406 PGN_RS05770 WP_010956212.1 1334823..1336127(+) (rarA) [Porphyromonas gingivalis ATCC 33277]
ATGAAACAAATACCCTTGGCCGAGAGAATGCGTCCAAAAACGCTGGCCGACTATGTGGGGCAGCAGCATCTGATCGGATC
GGGGGCTGTGCTCCGGCAGATGATCGAGCAGGGACAGACGCCATCCATGATCCTGTGGGGGCCTCCCGGAGTAGGCAAGA
CTACGCTGGCCGAAATCATTGCACATGAAGTGGATGCACCTTTCTATACATTGAGTGCGGTCAGCTCCGGTGTGAAGGAA
GTGCGGGAAGTAATAGCCGACATCGAATCCAATCGTGGCAATCTGTTCGACAAAGGAGGACGCGCCATCCTCTTCATCGA
CGAGATACACCGTTTCAGCAAGAGTCAGCAGGATTCTCTTCTGGCAGCAGTAGAGCGGGGAATAGTGACGCTGATCGGTG
CCACGACCGAAAATCCGAGTTTCGAAGTAATACGTCCGCTCCTATCGCGCTGTCAGGTCTATGTGCTCAAACCCCAAAGT
GATGAGGATCTGCTGCTACTGGCACACAGAGCTATCGATCGGGACGAACTGCTGGCTGCCAAGCATCCTGTACTGGAGGA
GACGGAAGCTCTGCTTCTCTATGCCGGAGGCGATGCGCGAAAGCTGCTGAACATCCTTGACCTTCTGGCCACAAGCGAAG
TGGAAGACCGGCTCGTCATTACCAACGAAAAGATACGTCAGCGCTTGCAAGAAAACCCCGCTGCTTTCGACAAGGGAGGC
GAACTCCACTATGATATAGCATCCGCCTTTATCAAAAGTATTCGGGGCAGTGATCCCGACGCGGCTATTTACTGGCTGGC
GCGCCTTATAGATGGTGGGGAGGAACCCTCATTCATCGCTCGCAGGCTGATCATATCGGCTTCGGAAGACATCGGCCTGG
CTAATCCGAATGCCATGCTCATCGCCATGGCCTGTGCCGAGGCTTTAGACCGAATCGGCTGGCCTGAAGGCCGTATTCCA
TTGGCCGAGGCTACCATTTATTTGGCTACTTCGGAGAAGAGCAATTCAGCTTATTTGGCCATCGACTCCGCTCTCGAATA
TGTCCGTCAATCAGGTAATCTTCCCGTGCCCCTACACCTGCGTAATGCCCCTACCCGTCTGATGGCCGACCTTGACTATG
GCAAGGGTTACAAATACTCGCATGATTTTCCGGAACACTTCGTCTCACAGCAATATCTGCCCGACAAAGCTGCTAACACC
TCTTTCTGGACACCTCAAATGCACACAGTGCATGAAGCCAAGCTGGGAGAACGGATGAAGCGATGGTGGAAGAGGGAAAA
ATCCCAAAAGGATACAGCAGAATAA

Domains

Predicted by InterProScan.

• AAA C-terminal domain (AAA_assoc_2) (188-255)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (10-131)

• MgsA AAA+ ATPase C terminal (MgsA_C) (256-423)

3D structure

• AlphaFold DB: Q7MVG1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rarA	Bacillus subtilis subsp. subtilis str. 168	40.187	98.618	0.396