Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   C7M30_RS02065 Genome accession   NZ_CP028218
Coordinates   387948..388727 (-) Length   259 a.a.
NCBI ID   WP_003220850.1    Uniprot ID   G4NSM6
Organism   Bacillus subtilis strain SRCM102756     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 382948..393727
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M30_RS02035 (C7M30_00412) fliH 382966..383718 (-) 753 WP_201757485.1 flagellar assembly protein FliH -
  C7M30_RS02040 (C7M30_00413) fliG 383711..384727 (-) 1017 WP_003231981.1 flagellar motor switch protein FliG -
  C7M30_RS02045 (C7M30_00414) fliF 384740..386350 (-) 1611 WP_043940114.1 flagellar basal-body MS-ring/collar protein FliF -
  C7M30_RS02050 (C7M30_00415) fliE 386396..386716 (-) 321 WP_003238544.1 flagellar hook-basal body complex protein FliE -
  C7M30_RS02055 (C7M30_00416) flgC 386727..387179 (-) 453 WP_014663965.1 flagellar basal body rod protein FlgC -
  C7M30_RS02060 (C7M30_00417) flgB 387179..387568 (-) 390 WP_014663964.1 flagellar basal body rod protein FlgB -
  C7M30_RS02065 (C7M30_00418) codY 387948..388727 (-) 780 WP_003220850.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  C7M30_RS02070 (C7M30_00419) hslU 388767..390170 (-) 1404 WP_160243912.1 HslU--HslV peptidase ATPase subunit -
  C7M30_RS02075 (C7M30_00420) clpQ 390187..390732 (-) 546 WP_003238555.1 ATP-dependent protease subunit ClpQ -
  C7M30_RS02080 (C7M30_00421) xerC 390745..391659 (-) 915 WP_003231988.1 tyrosine recombinase XerC -
  C7M30_RS02085 (C7M30_00422) trmFO 391727..393034 (-) 1308 WP_015715883.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29013.22 Da        Isoelectric Point: 4.6514

>NTDB_id=283392 C7M30_RS02065 WP_003220850.1 387948..388727(-) (codY) [Bacillus subtilis strain SRCM102756]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=283392 C7M30_RS02065 WP_003220850.1 387948..388727(-) (codY) [Bacillus subtilis strain SRCM102756]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCTATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAGTATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGATCTGTTCCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCACGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAACTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAACGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTACTAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NSM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

100

100

1
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467

Multiple sequence alignment