Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   C7M29_RS17060 Genome accession   NZ_CP028217
Coordinates   3335652..3336431 (-) Length   259 a.a.
NCBI ID   WP_003220850.1    Uniprot ID   G4NSM6
Organism   Bacillus subtilis strain SRCM102751     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3330652..3341431
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M29_RS17030 (C7M29_03346) fliH 3330670..3331422 (-) 753 WP_003244804.1 flagellar assembly protein FliH -
  C7M29_RS17035 (C7M29_03347) fliG 3331415..3332431 (-) 1017 WP_003231981.1 flagellar motor switch protein FliG -
  C7M29_RS17040 (C7M29_03348) fliF 3332444..3334054 (-) 1611 WP_051388163.1 flagellar basal-body MS-ring/collar protein FliF -
  C7M29_RS17045 (C7M29_03349) fliE 3334100..3334420 (-) 321 WP_003238544.1 flagellar hook-basal body complex protein FliE -
  C7M29_RS17050 (C7M29_03350) flgC 3334431..3334883 (-) 453 WP_003245521.1 flagellar basal body rod protein FlgC -
  C7M29_RS17055 (C7M29_03351) flgB 3334883..3335272 (-) 390 WP_003245656.1 flagellar basal body rod protein FlgB -
  C7M29_RS17060 (C7M29_03352) codY 3335652..3336431 (-) 780 WP_003220850.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  C7M29_RS17065 (C7M29_03353) hslU 3336471..3337874 (-) 1404 WP_003245556.1 HslU--HslV peptidase ATPase subunit -
  C7M29_RS17070 (C7M29_03354) clpQ 3337891..3338436 (-) 546 WP_003238555.1 ATP-dependent protease subunit ClpQ -
  C7M29_RS17075 (C7M29_03355) xerC 3338449..3339363 (-) 915 WP_003231988.1 tyrosine recombinase XerC -
  C7M29_RS17080 (C7M29_03356) trmFO 3339431..3340738 (-) 1308 WP_161476996.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29013.22 Da        Isoelectric Point: 4.6514

>NTDB_id=283368 C7M29_RS17060 WP_003220850.1 3335652..3336431(-) (codY) [Bacillus subtilis strain SRCM102751]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=283368 C7M29_RS17060 WP_003220850.1 3335652..3336431(-) (codY) [Bacillus subtilis strain SRCM102751]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCTATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAACGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTACTAAACAACAAATTCTTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NSM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

100

100

1
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467

Multiple sequence alignment