Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   C7M28_RS20485 Genome accession   NZ_CP028215
Coordinates   3925899..3926678 (+) Length   259 a.a.
NCBI ID   WP_003220850.1    Uniprot ID   G4NSM6
Organism   Bacillus subtilis strain SRCM102750     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3920899..3931678
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M28_RS20465 (C7M28_04027) trmFO 3921592..3922899 (+) 1308 WP_003244725.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  C7M28_RS20470 (C7M28_04028) xerC 3922967..3923881 (+) 915 WP_003231988.1 tyrosine recombinase XerC -
  C7M28_RS20475 (C7M28_04029) clpQ 3923894..3924439 (+) 546 WP_003238555.1 ATP-dependent protease subunit ClpQ -
  C7M28_RS20480 (C7M28_04030) hslU 3924456..3925859 (+) 1404 WP_046381023.1 HslU--HslV peptidase ATPase subunit -
  C7M28_RS20485 (C7M28_04031) codY 3925899..3926678 (+) 780 WP_003220850.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  C7M28_RS20490 (C7M28_04032) flgB 3927058..3927447 (+) 390 WP_003245656.1 flagellar basal body rod protein FlgB -
  C7M28_RS20495 (C7M28_04033) flgC 3927447..3927899 (+) 453 WP_003245521.1 flagellar basal body rod protein FlgC -
  C7M28_RS20500 (C7M28_04034) fliE 3927910..3928230 (+) 321 WP_003238544.1 flagellar hook-basal body complex protein FliE -
  C7M28_RS20505 (C7M28_04035) fliF 3928276..3929886 (+) 1611 WP_046381024.1 flagellar basal-body MS-ring/collar protein FliF -
  C7M28_RS20510 (C7M28_04036) fliG 3929899..3930915 (+) 1017 WP_003231981.1 flagellar motor switch protein FliG -
  C7M28_RS20515 (C7M28_04037) fliH 3930908..3931660 (+) 753 WP_003244804.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29013.22 Da        Isoelectric Point: 4.6514

>NTDB_id=283306 C7M28_RS20485 WP_003220850.1 3925899..3926678(+) (codY) [Bacillus subtilis strain SRCM102750]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=283306 C7M28_RS20485 WP_003220850.1 3925899..3926678(+) (codY) [Bacillus subtilis strain SRCM102750]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCTATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTCCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCACGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAACGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTACTTAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NSM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

100

100

1
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467

Multiple sequence alignment