Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   C7M27_RS10150 Genome accession   NZ_CP028213
Coordinates   1971201..1971980 (-) Length   259 a.a.
NCBI ID   WP_003220850.1    Uniprot ID   G4NSM6
Organism   Bacillus subtilis strain SRCM102749     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1966201..1976980
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M27_RS10120 (C7M27_01993) fliH 1966219..1966971 (-) 753 WP_031314968.1 flagellar assembly protein FliH -
  C7M27_RS10125 (C7M27_01994) fliG 1966964..1967980 (-) 1017 WP_003231981.1 flagellar motor switch protein FliG -
  C7M27_RS10130 (C7M27_01995) fliF 1967993..1969603 (-) 1611 WP_043940114.1 flagellar basal-body MS-ring/collar protein FliF -
  C7M27_RS10135 (C7M27_01996) fliE 1969649..1969969 (-) 321 WP_003238544.1 flagellar hook-basal body complex protein FliE -
  C7M27_RS10140 (C7M27_01997) flgC 1969980..1970432 (-) 453 WP_021479294.1 flagellar basal body rod protein FlgC -
  C7M27_RS10145 (C7M27_01998) flgB 1970432..1970821 (-) 390 WP_003245656.1 flagellar basal body rod protein FlgB -
  C7M27_RS10150 (C7M27_01999) codY 1971201..1971980 (-) 780 WP_003220850.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  C7M27_RS10155 (C7M27_02000) hslU 1972020..1973423 (-) 1404 WP_014476801.1 HslU--HslV peptidase ATPase subunit -
  C7M27_RS10160 (C7M27_02001) clpQ 1973440..1973985 (-) 546 WP_003238555.1 ATP-dependent protease subunit ClpQ -
  C7M27_RS10165 (C7M27_02002) xerC 1973998..1974912 (-) 915 WP_003231988.1 tyrosine recombinase XerC -
  C7M27_RS10170 (C7M27_02003) trmFO 1974980..1976287 (-) 1308 WP_003244725.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29013.22 Da        Isoelectric Point: 4.6514

>NTDB_id=283183 C7M27_RS10150 WP_003220850.1 1971201..1971980(-) (codY) [Bacillus subtilis strain SRCM102749]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=283183 C7M27_RS10150 WP_003220850.1 1971201..1971980(-) (codY) [Bacillus subtilis strain SRCM102749]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAATTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCTATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAGTATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGATCTGTTCCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCACGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAACGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTGCTAAACAACAAATTCTTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NSM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

100

100

1
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467

Multiple sequence alignment