Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   C7M25_RS16765 Genome accession   NZ_CP028211
Coordinates   3366573..3367352 (-) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain SRCM102747     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3361573..3372352
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M25_RS16735 (C7M25_03370) fliH 3361617..3362372 (-) 756 WP_015239852.1 flagellar assembly protein FliH -
  C7M25_RS16740 (C7M25_03371) fliG 3362365..3363381 (-) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  C7M25_RS16745 (C7M25_03372) fliF 3363394..3365004 (-) 1611 WP_076424137.1 flagellar basal-body MS-ring/collar protein FliF -
  C7M25_RS16750 (C7M25_03373) fliE 3365047..3365367 (-) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  C7M25_RS16755 (C7M25_03374) flgC 3365378..3365830 (-) 453 WP_015239851.1 flagellar basal body rod protein FlgC -
  C7M25_RS16760 (C7M25_03375) flgB 3365830..3366219 (-) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  C7M25_RS16765 (C7M25_03376) codY 3366573..3367352 (-) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  C7M25_RS16770 (C7M25_03377) hslU 3367390..3368793 (-) 1404 WP_007611413.1 HslU--HslV peptidase ATPase subunit -
  C7M25_RS16775 (C7M25_03378) hslV 3368810..3369355 (-) 546 WP_014417767.1 ATP-dependent protease subunit HslV -
  C7M25_RS16780 (C7M25_03379) xerC 3369371..3370288 (-) 918 WP_032871470.1 tyrosine recombinase XerC -
  C7M25_RS16785 (C7M25_03380) trmFO 3370358..3371665 (-) 1308 WP_094031705.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=283047 C7M25_RS16765 WP_003154263.1 3366573..3367352(-) (codY) [Bacillus velezensis strain SRCM102747]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=283047 C7M25_RS16765 WP_003154263.1 3366573..3367352(-) (codY) [Bacillus velezensis strain SRCM102747]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ACCAGCAGATTGAAAATGACCGTATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471

Multiple sequence alignment