Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   C7M22_RS15285 Genome accession   NZ_CP028208
Coordinates   3034149..3034928 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain SRCM102744     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3029149..3039928
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M22_RS15265 (C7M22_03070) trmFO 3029836..3031143 (+) 1308 WP_094031705.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  C7M22_RS15270 (C7M22_03071) xerC 3031213..3032130 (+) 918 WP_032871470.1 tyrosine recombinase XerC -
  C7M22_RS15275 (C7M22_03072) hslV 3032146..3032691 (+) 546 WP_014417767.1 ATP-dependent protease subunit HslV -
  C7M22_RS15280 (C7M22_03073) hslU 3032708..3034111 (+) 1404 WP_007611413.1 HslU--HslV peptidase ATPase subunit -
  C7M22_RS15285 (C7M22_03074) codY 3034149..3034928 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  C7M22_RS15290 (C7M22_03075) flgB 3035282..3035671 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  C7M22_RS15295 (C7M22_03076) flgC 3035671..3036123 (+) 453 WP_015239851.1 flagellar basal body rod protein FlgC -
  C7M22_RS15300 (C7M22_03077) fliE 3036134..3036454 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  C7M22_RS15305 (C7M22_03078) fliF 3036497..3038107 (+) 1611 WP_076424137.1 flagellar basal-body MS-ring/collar protein FliF -
  C7M22_RS15310 (C7M22_03079) fliG 3038120..3039136 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  C7M22_RS15315 (C7M22_03080) fliH 3039129..3039884 (+) 756 WP_015239852.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=282818 C7M22_RS15285 WP_003154263.1 3034149..3034928(+) (codY) [Bacillus velezensis strain SRCM102744]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=282818 C7M22_RS15285 WP_003154263.1 3034149..3034928(+) (codY) [Bacillus velezensis strain SRCM102744]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ACCAGCAGATTGAAAATGACCGTATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471

Multiple sequence alignment