Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   C7M18_RS15440 Genome accession   NZ_CP028204
Coordinates   3089553..3090332 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain SRCM102755     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3084553..3095332
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M18_RS15420 (C7M18_03105) trmFO 3085240..3086547 (+) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  C7M18_RS15425 (C7M18_03106) xerC 3086617..3087534 (+) 918 WP_160216850.1 tyrosine recombinase XerC -
  C7M18_RS15430 (C7M18_03107) hslV 3087550..3088095 (+) 546 WP_014417767.1 ATP-dependent protease subunit HslV -
  C7M18_RS15435 (C7M18_03108) hslU 3088112..3089515 (+) 1404 WP_061862191.1 HslU--HslV peptidase ATPase subunit -
  C7M18_RS15440 (C7M18_03109) codY 3089553..3090332 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  C7M18_RS15445 (C7M18_03110) flgB 3090686..3091075 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  C7M18_RS15450 (C7M18_03111) flgC 3091075..3091527 (+) 453 WP_003154259.1 flagellar basal body rod protein FlgC -
  C7M18_RS15455 (C7M18_03112) fliE 3091538..3091858 (+) 321 WP_121984421.1 flagellar hook-basal body complex protein FliE -
  C7M18_RS15460 (C7M18_03113) fliF 3091901..3093511 (+) 1611 WP_099721951.1 flagellar basal-body MS-ring/collar protein FliF -
  C7M18_RS15465 (C7M18_03114) fliG 3093524..3094540 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  C7M18_RS15470 (C7M18_03115) fliH 3094533..3095288 (+) 756 WP_017417778.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=282515 C7M18_RS15440 WP_003154263.1 3089553..3090332(+) (codY) [Bacillus velezensis strain SRCM102755]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=282515 C7M18_RS15440 WP_003154263.1 3089553..3090332(+) (codY) [Bacillus velezensis strain SRCM102755]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTGATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCAGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTCATCGTTAACGCGCTGAGAAAACTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471

Multiple sequence alignment