Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   LPC_RS12165 Genome accession   NC_009494
Coordinates   2749165..2749869 (+) Length   234 a.a.
NCBI ID   WP_013101755.1    Uniprot ID   -
Organism   Legionella pneumophila str. Corby     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2744165..2754869
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPC_RS12140 (LPC_1794) - 2745398..2746276 (+) 879 WP_011947171.1 lpg2327 family Dot/Icm T4SS effector -
  LPC_RS12145 (LPC_1795) - 2746539..2746922 (+) 384 WP_011947172.1 hypothetical protein -
  LPC_RS12150 (LPC_1796) - 2747116..2747346 (+) 231 WP_011947173.1 exodeoxyribonuclease VII small subunit -
  LPC_RS12155 (LPC_1797) - 2747327..2748223 (+) 897 WP_011947174.1 polyprenyl synthetase family protein -
  LPC_RS12160 (LPC_1798) bioC 2748267..2749121 (-) 855 WP_011947175.1 malonyl-ACP O-methyltransferase BioC -
  LPC_RS12165 (LPC_1799) comFC 2749165..2749869 (+) 705 WP_013101755.1 ComF family protein Machinery gene
  LPC_RS12170 (LPC_1800) - 2749898..2750971 (-) 1074 WP_011947177.1 M50 family metallopeptidase -
  LPC_RS12175 (LPC_1801) - 2751028..2751306 (-) 279 WP_010948040.1 hypothetical protein -
  LPC_RS12185 (LPC_1803) hemA 2751627..2752901 (+) 1275 WP_013101756.1 glutamyl-tRNA reductase -
  LPC_RS12190 (LPC_1804) prfA 2752885..2753973 (+) 1089 WP_011947180.1 peptide chain release factor 1 -
  LPC_RS12195 (LPC_1805) prmC 2753966..2754829 (+) 864 WP_011947181.1 peptide chain release factor N(5)-glutamine methyltransferase -

Sequence

Protein


Download         Length: 234 a.a.        Molecular weight: 26845.50 Da        Isoelectric Point: 9.3959

>NTDB_id=28248 LPC_RS12165 WP_013101755.1 2749165..2749869(+) (comFC) [Legionella pneumophila str. Corby]
MLQKFLSITQNLRLPSICTLCNQFHKSQLAVCSNCIEFMKQLGSCCQYCAYPLSDDTYLVCGQCVRKRPSFDRAYIAYRF
EEPLRNLIHQFKYHNGLYLASFLKQLLLDALPKSALKPDCLIPVPMHPKRLKRRGFNQAAVLTRLLARQLKIPYDLYYCQ
KIINTASQANLDGEQRRKNLRHAFYVSPVTYEHVMIVDDLLTTGSTANEMAHTLKNAGVKRVDICCCARAVTKN

Nucleotide


Download         Length: 705 bp        

>NTDB_id=28248 LPC_RS12165 WP_013101755.1 2749165..2749869(+) (comFC) [Legionella pneumophila str. Corby]
GTGCTCCAAAAATTCTTAAGTATAACACAGAACTTACGTTTACCTTCAATATGCACTCTTTGCAACCAGTTTCACAAAAG
CCAACTTGCAGTTTGCTCTAATTGCATAGAGTTTATGAAACAACTTGGATCTTGCTGTCAGTACTGTGCCTACCCCCTTT
CTGATGATACGTATCTGGTTTGTGGTCAATGCGTTAGAAAAAGGCCCTCCTTTGATAGGGCTTATATAGCGTATCGTTTT
GAAGAACCTCTGCGTAATTTAATACATCAGTTTAAATACCATAATGGCCTTTATCTGGCCTCGTTTCTAAAGCAATTACT
TCTTGATGCCTTACCCAAAAGCGCATTGAAACCAGATTGCCTAATTCCCGTTCCCATGCATCCCAAACGATTAAAACGAA
GGGGATTTAACCAGGCTGCTGTATTAACCAGATTATTAGCTCGTCAATTAAAAATCCCTTATGATTTATATTATTGCCAA
AAAATAATCAATACCGCTTCACAAGCCAACCTTGATGGAGAGCAACGAAGGAAAAATTTACGTCATGCATTTTATGTATC
ACCTGTAACTTATGAACACGTCATGATTGTTGATGACTTATTAACCACAGGCAGCACAGCCAATGAAATGGCACATACAT
TAAAAAATGCCGGAGTTAAGAGAGTAGATATATGTTGTTGTGCGCGGGCTGTAACTAAAAATTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(140-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Legionella pneumophila str. Paris

97.009

100

0.97
  comFC Legionella pneumophila strain ERS1305867

96.939

83.761

0.812

Multiple sequence alignment