Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   C7M17_RS07060 Genome accession   NZ_CP028202
Coordinates   1317716..1318495 (-) Length   259 a.a.
NCBI ID   WP_003220850.1    Uniprot ID   G4NSM6
Organism   Bacillus subtilis strain SRCM102754     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1312716..1323495
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M17_RS07030 (C7M17_01384) fliH 1312734..1313486 (-) 753 WP_183163628.1 flagellar assembly protein FliH -
  C7M17_RS07035 (C7M17_01385) fliG 1313479..1314495 (-) 1017 WP_003231981.1 flagellar motor switch protein FliG -
  C7M17_RS07040 (C7M17_01386) fliF 1314508..1316118 (-) 1611 WP_087614551.1 flagellar basal-body MS-ring/collar protein FliF -
  C7M17_RS07045 (C7M17_01387) fliE 1316164..1316484 (-) 321 WP_003238544.1 flagellar hook-basal body complex protein FliE -
  C7M17_RS07050 (C7M17_01388) flgC 1316495..1316947 (-) 453 WP_003245521.1 flagellar basal body rod protein FlgC -
  C7M17_RS07055 (C7M17_01389) flgB 1316947..1317336 (-) 390 WP_003245656.1 flagellar basal body rod protein FlgB -
  C7M17_RS07060 (C7M17_01390) codY 1317716..1318495 (-) 780 WP_003220850.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  C7M17_RS07065 (C7M17_01391) hslU 1318535..1319938 (-) 1404 WP_003245556.1 HslU--HslV peptidase ATPase subunit -
  C7M17_RS07070 (C7M17_01392) clpQ 1319955..1320500 (-) 546 WP_003238555.1 ATP-dependent protease subunit ClpQ -
  C7M17_RS07075 (C7M17_01393) xerC 1320513..1321427 (-) 915 WP_003231988.1 tyrosine recombinase XerC -
  C7M17_RS07080 (C7M17_01394) trmFO 1321495..1322802 (-) 1308 WP_122894536.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29013.22 Da        Isoelectric Point: 4.6514

>NTDB_id=282403 C7M17_RS07060 WP_003220850.1 1317716..1318495(-) (codY) [Bacillus subtilis strain SRCM102754]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=282403 C7M17_RS07060 WP_003220850.1 1317716..1318495(-) (codY) [Bacillus subtilis strain SRCM102754]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCTATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTACTAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NSM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

100

100

1
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467

Multiple sequence alignment