Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   SPCG_RS09170 Genome accession   NC_010582
Coordinates   1755092..1756363 (+) Length   423 a.a.
NCBI ID   WP_001113178.1    Uniprot ID   -
Organism   Streptococcus pneumoniae CGSP14     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1750092..1761363
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPCG_RS09130 (SPCG_1763) - 1750280..1751314 (-) 1035 WP_000747915.1 ATP-binding protein -
  SPCG_RS09135 (SPCG_1764) - 1751433..1751582 (-) 150 Protein_1731 7,8-dihydro-8-oxoguanine-triphosphatase -
  SPCG_RS09140 (SPCG_1765) - 1751563..1752651 (-) 1089 WP_000738088.1 site-2 protease family protein -
  SPCG_RS09145 (SPCG_1766) - 1752670..1753140 (-) 471 WP_000257097.1 DUF3013 family protein -
  SPCG_RS09150 (SPCG_1767) - 1753431..1753883 (-) 453 WP_000961810.1 type II toxin-antitoxin system HicB family antitoxin -
  SPCG_RS09155 - 1753920..1754099 (-) 180 WP_041170910.1 type II toxin-antitoxin system HicA family toxin -
  SPCG_RS09160 (SPCG_1768) - 1754236..1754415 (-) 180 WP_001809903.1 hypothetical protein -
  SPCG_RS09165 (SPCG_1770) - 1754580..1754822 (-) 243 WP_000818082.1 hypothetical protein -
  SPCG_RS09170 (SPCG_1771) rarA 1755092..1756363 (+) 1272 WP_001113178.1 replication-associated recombination protein A Machinery gene
  SPCG_RS09180 (SPCG_1772) - 1756908..1758227 (-) 1320 WP_000502559.1 glycoside hydrolase family 32 protein -
  SPCG_RS09185 (SPCG_1773) - 1758237..1759853 (-) 1617 WP_000669745.1 ABC transporter substrate-binding protein -
  SPCG_RS09190 (SPCG_1774) - 1759882..1760772 (-) 891 WP_000797961.1 carbohydrate ABC transporter permease -

Sequence

Protein


Download         Length: 423 a.a.        Molecular weight: 46934.34 Da        Isoelectric Point: 5.9132

>NTDB_id=28235 SPCG_RS09170 WP_001113178.1 1755092..1756363(+) (rarA) [Streptococcus pneumoniae CGSP14]
MPDNLALRMRPKTIDQVIGQDHLVGPGKIIRRMVEANRLSSMILYGPPGIGKTSIASAIAGTTKYAFRTFNATVDSKKRL
QEISEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLESGLVIMIGATTENPFFSVTPAIRSRVQIFELEPLSNQDVKEALQ
IALSNPERGFDFPIELDEDALDFIATSTNGDLRSAFNSLDLAVLSTPENDEGIRHITLDIMENSLQRSYITMDKDGDGHY
DVLSALQKSIRGSDVDASLHYAARLIEAGDLPSLARRLTVIAYEDIGLANPEAQIHTVTALDAAQRIGFPEARILIANVV
IDLALSPKSNSAYVAMDKALADLKASGHLPIPRHLRDGHYSGSKELGNAQDYLYPHNYPGNWVKQDYLPEKIRNHHYFQA
EDTGKYERALAQRKEAIDHLRKI

Nucleotide


Download         Length: 1272 bp        

>NTDB_id=28235 SPCG_RS09170 WP_001113178.1 1755092..1756363(+) (rarA) [Streptococcus pneumoniae CGSP14]
ATGCCAGACAATCTCGCGCTTCGCATGCGCCCTAAAACCATCGACCAGGTCATCGGTCAGGATCATCTGGTCGGACCTGG
AAAAATCATCCGCCGCATGGTGGAAGCCAACCGCCTGTCCTCCATGATTCTATATGGCCCTCCTGGAATCGGCAAAACCA
GTATTGCCTCTGCCATCGCTGGAACGACCAAGTATGCCTTTCGAACTTTCAATGCGACAGTTGATAGTAAAAAGCGACTG
CAAGAAATCTCGGAAGAAGCTAAATTTTCTGGTGGTCTCGTCCTATTGCTAGACGAAATTCATCGACTAGATAAGACCAA
GCAAGACTTCCTCTTGCCTCTCTTGGAAAGTGGACTGGTCATCATGATTGGAGCAACGACTGAAAATCCTTTCTTTTCCG
TCACTCCTGCCATTCGTAGCCGTGTTCAAATTTTTGAGTTGGAACCTCTGTCTAACCAAGACGTCAAAGAGGCCCTGCAG
ATAGCTCTAAGTAACCCTGAACGTGGTTTTGATTTTCCAATAGAACTAGATGAGGATGCGCTGGATTTCATCGCAACCTC
TACAAACGGAGACCTTCGCTCTGCCTTTAACTCACTGGACTTGGCTGTTCTCTCTACCCCTGAGAATGACGAGGGCATTC
GCCACATCACCTTAGACATCATGGAAAATAGTCTTCAGAGAAGCTACATCACTATGGACAAGGATGGAGACGGTCACTAT
GATGTTCTATCTGCCCTGCAAAAGTCTATCCGTGGCTCAGATGTGGATGCCAGTCTCCACTATGCTGCCCGCTTGATTGA
GGCTGGGGATCTGCCTAGTCTCGCTCGTCGCTTGACTGTTATCGCCTATGAAGATATCGGTTTAGCCAATCCTGAGGCCC
AGATTCATACCGTGACTGCTCTGGATGCTGCACAAAGGATTGGTTTCCCAGAAGCCCGCATTCTCATCGCCAATGTCGTG
ATTGATTTGGCCCTTTCTCCAAAATCCAACTCAGCCTATGTAGCTATGGATAAGGCACTTGCTGACCTCAAAGCATCAGG
GCACTTGCCTATTCCGCGACACCTGCGTGATGGGCACTACAGTGGAAGCAAGGAACTGGGGAATGCCCAAGACTATCTCT
ATCCACACAACTATCCTGGAAATTGGGTAAAGCAAGACTATCTGCCAGAAAAAATTCGTAATCATCACTATTTCCAAGCA
GAAGATACTGGTAAATATGAACGGGCTTTGGCTCAAAGAAAGGAAGCTATCGACCATTTGCGAAAAATCTGA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-416)

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)

AAA C-terminal domain (AAA_assoc_2)

(173-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

58.68

96.69

0.567