Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   C9J79_RS00435 Genome accession   NZ_CP028185
Coordinates   84955..85923 (+) Length   322 a.a.
NCBI ID   WP_063668012.1    Uniprot ID   -
Organism   Campylobacter jejuni strain CFSAN054107     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 79955..90923
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C9J79_RS00410 (C9J79_00415) cdsA 80865..81590 (-) 726 WP_002859635.1 phosphatidate cytidylyltransferase -
  C9J79_RS00415 (C9J79_00420) - 81599..81937 (-) 339 WP_002852397.1 hypothetical protein -
  C9J79_RS00420 (C9J79_00425) - 81939..83246 (-) 1308 WP_002902413.1 NFACT family protein -
  C9J79_RS00425 (C9J79_00430) mobA 83308..83883 (+) 576 WP_002867312.1 molybdenum cofactor guanylyltransferase -
  C9J79_RS00430 (C9J79_00435) pldA 83880..84869 (+) 990 WP_002867311.1 phospholipase A -
  C9J79_RS00435 (C9J79_00440) ceuB 84955..85923 (+) 969 WP_063668012.1 ABC transporter permease Machinery gene
  C9J79_RS00440 (C9J79_00445) ceuC 85916..86854 (+) 939 WP_070308935.1 iron chelate uptake ABC transporter family permease subunit -
  C9J79_RS00445 (C9J79_00450) ceuD 86851..87606 (+) 756 WP_002896069.1 ABC transporter ATP-binding protein -
  C9J79_RS00450 (C9J79_00455) ceuB 87619..88611 (+) 993 WP_002867307.1 enterochelin ABC transporter substrate-binding protein CeuB -
  C9J79_RS00460 (C9J79_00465) - 88837..89391 (-) 555 WP_043012925.1 membrane protein -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 35481.45 Da        Isoelectric Point: 9.6678

>NTDB_id=282097 C9J79_RS00435 WP_063668012.1 84955..85923(+) (ceuB) [Campylobacter jejuni strain CFSAN054107]
MFFKHILSLKVLIALLLFFGMISLFIGVISINVKDILNLNSTQLEIITLTRIPRLIAILLTGMSLSICGLIMQQLTQNKF
VSPTTAGTMDCAKFGILISLIFFTGASFFIQAIIASIFALLGSFIFIQILRKIKLKDVIFVPLIGLMFGGIISAITTFFA
YALNYIQNIQGWLQGSMANVMQGNYELLYISLPLFILAYFLAHKITIVGMGEDIALNLGISYNGILFLGLMIVSIITSLV
IVSVGIIPFLGLIIPNLVALYLGDNLRKNLIYIALCGALFLLVCDIISRLVIFPFEMPLSITTGVLGSLIFIFLLLKRKV
YA

Nucleotide


Download         Length: 969 bp        

>NTDB_id=282097 C9J79_RS00435 WP_063668012.1 84955..85923(+) (ceuB) [Campylobacter jejuni strain CFSAN054107]
TTGTTTTTTAAGCATATATTGAGTTTAAAAGTGCTTATAGCTTTACTTTTATTCTTTGGAATGATAAGTTTATTTATAGG
AGTTATCAGTATCAATGTAAAAGATATCCTTAATCTTAACTCCACTCAACTAGAAATCATAACCCTTACAAGAATTCCTA
GACTTATAGCGATTTTACTCACAGGAATGAGTCTTAGTATATGCGGGCTTATCATGCAACAACTCACGCAAAATAAATTC
GTTTCTCCAACTACGGCAGGAACTATGGATTGTGCTAAATTTGGCATACTTATTTCTTTAATATTTTTTACTGGAGCATC
TTTTTTCATTCAAGCTATCATTGCTTCTATATTTGCACTTTTGGGTTCTTTTATATTTATCCAAATTTTAAGAAAAATCA
AACTCAAAGATGTGATTTTTGTACCTTTGATAGGCTTGATGTTTGGAGGCATTATTAGTGCTATAACCACTTTTTTTGCC
TATGCTTTAAATTATATACAAAATATCCAAGGCTGGCTACAAGGCAGTATGGCAAATGTTATGCAGGGAAATTATGAATT
ACTTTACATTTCTTTGCCACTTTTTATACTTGCTTATTTTTTAGCTCACAAAATCACCATAGTTGGCATGGGTGAAGATA
TAGCTTTAAATCTTGGAATTTCTTATAATGGGATATTATTTTTAGGCTTGATGATTGTAAGCATTATCACTAGTTTAGTG
ATTGTAAGCGTTGGGATTATCCCTTTTTTAGGGCTAATTATCCCAAATTTAGTAGCTCTTTATCTAGGTGATAATCTTAG
AAAAAATCTTATCTATATAGCACTTTGTGGAGCTTTGTTTTTACTTGTTTGCGATATCATTTCAAGACTTGTCATCTTTC
CTTTTGAAATGCCTTTAAGCATCACTACAGGTGTTTTAGGATCTTTAATCTTTATCTTTCTTTTGCTAAAAAGGAAAGTT
TATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(15-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

98.758

100

0.988

Multiple sequence alignment