Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   LL14B4_RS11340 Genome accession   NZ_CP028160
Coordinates   2285865..2286803 (-) Length   312 a.a.
NCBI ID   WP_109991327.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain 14B4     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2280865..2291803
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LL14B4_RS11315 (LL14B4_11305) frr 2280983..2281540 (-) 558 WP_004254618.1 ribosome recycling factor -
  LL14B4_RS11320 (LL14B4_11310) pyrH 2281752..2282468 (-) 717 WP_021464089.1 UMP kinase -
  LL14B4_RS11325 (LL14B4_11315) - 2282553..2283005 (-) 453 WP_109991326.1 hypothetical protein -
  LL14B4_RS11330 (LL14B4_11320) - 2283139..2284326 (-) 1188 WP_058217400.1 acetate kinase -
  LL14B4_RS11335 (LL14B4_11325) - 2284483..2285670 (-) 1188 WP_004254593.1 acetate kinase -
  LL14B4_RS11340 (LL14B4_11330) comYH 2285865..2286803 (-) 939 WP_109991327.1 class I SAM-dependent methyltransferase Machinery gene
  LL14B4_RS11345 (LL14B4_11335) - 2286891..2287142 (-) 252 WP_004254583.1 DUF3165 family protein -
  LL14B4_RS11350 (LL14B4_11340) typA 2287243..2289075 (-) 1833 WP_025016832.1 translational GTPase TypA -
  LL14B4_RS11355 (LL14B4_11345) - 2289263..2289721 (-) 459 WP_058204391.1 hypothetical protein -
  LL14B4_RS11360 (LL14B4_11350) - 2289878..2290504 (-) 627 WP_109991328.1 ABC transporter ATP-binding protein -
  LL14B4_RS13590 - 2290505..2290954 (-) 450 WP_239449802.1 DUF1430 domain-containing protein -

Sequence

Protein


Download         Length: 312 a.a.        Molecular weight: 34740.90 Da        Isoelectric Point: 4.4060

>NTDB_id=281823 LL14B4_RS11340 WP_109991327.1 2285865..2286803(-) (comYH) [Lactococcus lactis subsp. lactis strain 14B4]
MDMEKVAQGFELVVANIMLLSEKLGTDFYDAFVEQNAAFLDDTDQGIVELSVNNDKLRQLNLSNKEWQKLFQFVLLKGSQ
VAPLQPNHAMTPDAIGLIFNFIIEHLNKNSELRLIEFGSGMGNLAETLLVNLNKKVDYVGFEVDDLLLDLSASMAEIMGS
QAEFMQIDAVQKRLMEPADVVVSDLPIGFYPDDEVAKNFEVATTDGHTFAHHLLIEQSFNYLKEGSFAIFLAPEDLLTSP
QGPLLKEWISKHGSVMAVITLPKSLFNADAKAIYVLKKGPAAHATFAHPLSSLTDRESLEVFMEEFTKIVKL

Nucleotide


Download         Length: 939 bp        

>NTDB_id=281823 LL14B4_RS11340 WP_109991327.1 2285865..2286803(-) (comYH) [Lactococcus lactis subsp. lactis strain 14B4]
ATGGATATGGAAAAAGTGGCTCAAGGTTTTGAGCTAGTTGTTGCAAATATTATGTTATTATCTGAGAAATTGGGTACAGA
TTTTTATGATGCTTTTGTAGAACAAAATGCTGCTTTTTTAGATGATACTGACCAAGGAATTGTTGAATTGTCAGTAAATA
ATGACAAACTTCGTCAGTTAAATTTATCAAATAAGGAGTGGCAAAAACTTTTTCAATTTGTTTTGTTGAAAGGGTCACAA
GTCGCACCACTTCAGCCCAATCATGCAATGACTCCAGATGCAATTGGTTTAATTTTTAATTTCATTATTGAACATCTTAA
TAAAAATTCTGAACTTCGTTTAATTGAATTTGGGTCTGGCATGGGTAATCTTGCTGAAACGCTTTTGGTTAATCTTAATA
AAAAGGTTGATTATGTAGGCTTTGAAGTTGATGATTTACTTTTAGATTTGTCTGCTTCAATGGCTGAAATTATGGGGAGT
CAGGCTGAGTTCATGCAAATTGATGCAGTACAAAAGCGTTTGATGGAACCTGCAGACGTTGTTGTCAGTGATTTACCAAT
TGGTTTTTATCCGGATGATGAAGTTGCAAAGAATTTTGAAGTTGCGACTACTGACGGACATACTTTTGCTCATCATCTTT
TGATTGAGCAATCATTTAATTATTTAAAAGAGGGTTCTTTTGCCATTTTCCTAGCTCCAGAAGATTTACTGACAAGTCCT
CAAGGACCACTATTAAAGGAATGGATTAGTAAACATGGAAGTGTGATGGCTGTCATCACTTTACCAAAATCACTTTTTAA
TGCTGATGCTAAGGCGATTTATGTTTTGAAAAAGGGGCCGGCTGCACATGCAACTTTTGCTCACCCTTTGTCTTCACTGA
CAGACAGAGAAAGTTTAGAAGTCTTTATGGAAGAATTTACAAAAATTGTAAAATTATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA140

48.882

100

0.49
  comYH Streptococcus mutans UA159

48.562

100

0.487

Multiple sequence alignment