Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   C8114_RS02885 Genome accession   NZ_CP028149
Coordinates   663729..665585 (+) Length   618 a.a.
NCBI ID   WP_003450047.1    Uniprot ID   -
Organism   Clostridium perfringens strain JXJA17 isolate Intestine     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 658729..670585
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C8114_RS02870 (C8114_02860) - 659742..660536 (+) 795 WP_114805664.1 HAD family hydrolase -
  C8114_RS02875 (C8114_02865) - 660670..661116 (-) 447 WP_003450077.1 MarR family transcriptional regulator -
  C8114_RS02880 (C8114_02870) - 661439..663736 (+) 2298 WP_003450217.1 ABC transporter ATP-binding protein -
  C8114_RS02885 (C8114_02875) rcrQ 663729..665585 (+) 1857 WP_003450047.1 ABC transporter ATP-binding protein Regulator
  C8114_RS02890 (C8114_02880) - 666101..666982 (+) 882 WP_003450197.1 hypothetical protein -
  C8114_RS02895 (C8114_02885) - 667237..668286 (+) 1050 WP_003449992.1 AEC family transporter -
  C8114_RS02900 (C8114_02890) - 668613..669611 (+) 999 WP_003450273.1 2-hydroxyacid dehydrogenase -

Sequence

Protein


Download         Length: 618 a.a.        Molecular weight: 68452.10 Da        Isoelectric Point: 5.9525

>NTDB_id=281720 C8114_RS02885 WP_003450047.1 663729..665585(+) (rcrQ) [Clostridium perfringens strain JXJA17 isolate Intestine]
MSKERKGGMGGPMGRMGGGPRAVEKAKDFKGTMKKLGVYLKPYSLSIAIVILFAIGSAAFSIVGPKILGKATTKIFEGLV
QKITGVPDASIDFGYIGNIAMILVALYLVSSLFGIIQSFIMSGVAQKVSYNLRKQISEKMDTLPLNYFDTRTNGEVLSRI
TNDVDTVNQTLNQSLSQIITSVVTLIGVLIMMFSISWIMTLATFIILPVSMVLISLVVKKSQKYFKSQQEYLGHLNGQVE
EVYGGHNIMKAFNREEASTKDFDELNNTLYKSAWKSQFLSGMMMPIMSFVGNLGYVLVSILGGWLTIKSVITVGDIQAFI
QYVRSFNQPISQMAQVANIMQSTAAAAERVFEFLDEEDEVKDPVNSADPSEIRGEVEFEDVHFGYNEDKIIINDFSVDVK
PGQKVAIVGPTGAGKTTIVKLLMRFYDINSGSIKIDGHDIRDFKRADLRNLFGMVLQDTWLFNGTIMENLRYGRLDATDA
EVKEAAKAAHVDHFVKTLPDGYNMVLNEEASNISQGQKQLLTIARAFLKDPKLLILDEATSSVDTRTELLIQKAMEKLME
GRTSFIIAHRLSTIRDADLILVMKDGDIVEQGNHEELLEKGGFYSSLYNSQFEQSSAS

Nucleotide


Download         Length: 1857 bp        

>NTDB_id=281720 C8114_RS02885 WP_003450047.1 663729..665585(+) (rcrQ) [Clostridium perfringens strain JXJA17 isolate Intestine]
ATGAGTAAAGAAAGAAAAGGCGGAATGGGCGGCCCAATGGGTAGAATGGGCGGAGGCCCAAGAGCCGTTGAAAAAGCAAA
AGATTTTAAAGGAACAATGAAAAAGCTTGGGGTTTATTTAAAACCCTATAGTTTATCTATAGCTATTGTAATATTATTTG
CTATAGGAAGTGCTGCCTTCTCAATTGTAGGACCTAAGATTTTAGGTAAAGCTACTACAAAAATATTTGAAGGTTTAGTT
CAAAAGATAACCGGGGTACCAGATGCTTCTATAGATTTTGGATACATTGGAAATATAGCAATGATTTTAGTAGCTCTATA
CTTAGTAAGTTCATTATTTGGGATTATACAATCTTTTATAATGTCAGGAGTTGCTCAAAAGGTTTCTTATAATTTAAGAA
AGCAAATATCAGAAAAAATGGATACTTTACCTCTTAATTATTTTGATACAAGAACAAACGGAGAGGTTTTATCAAGAATT
ACAAATGACGTTGATACAGTGAACCAAACTTTAAATCAAAGTTTATCACAGATAATAACTTCAGTGGTTACTTTAATTGG
AGTATTAATAATGATGTTCTCAATAAGTTGGATTATGACTTTAGCAACATTTATAATACTTCCAGTTTCAATGGTTCTTA
TATCTTTAGTTGTTAAGAAATCTCAAAAATACTTTAAATCTCAACAAGAATACTTAGGTCATCTTAATGGTCAAGTAGAA
GAGGTTTATGGTGGACACAATATAATGAAAGCTTTCAATAGAGAGGAAGCTTCAACTAAAGACTTTGATGAATTAAATAA
CACTTTATATAAATCAGCTTGGAAATCTCAATTCTTATCAGGTATGATGATGCCAATCATGTCTTTTGTAGGAAACTTAG
GATATGTTTTAGTTTCAATACTTGGTGGATGGTTAACAATTAAAAGTGTTATAACAGTTGGGGATATACAAGCATTTATC
CAATATGTACGTTCATTTAACCAACCAATATCTCAAATGGCTCAGGTTGCAAATATAATGCAATCAACAGCGGCCGCTGC
TGAGAGAGTATTTGAATTCTTAGATGAAGAGGATGAGGTTAAAGATCCAGTTAATTCAGCAGATCCTTCAGAAATAAGAG
GAGAAGTTGAATTTGAAGATGTTCACTTTGGATATAATGAAGATAAGATAATAATAAATGATTTCTCAGTAGATGTTAAA
CCAGGGCAAAAGGTGGCTATTGTTGGACCTACAGGAGCAGGTAAAACTACAATAGTTAAATTATTAATGAGATTCTACGA
TATAAATAGTGGAAGCATTAAGATTGATGGTCATGATATAAGAGACTTTAAGCGTGCTGATTTACGTAACTTATTTGGTA
TGGTTCTTCAAGATACATGGTTATTTAATGGAACTATAATGGAGAATTTACGTTATGGAAGACTAGATGCAACAGATGCT
GAAGTTAAAGAAGCTGCTAAGGCTGCCCATGTTGATCATTTCGTAAAAACTTTACCAGATGGATATAATATGGTTTTAAA
TGAAGAAGCAAGTAATATATCACAAGGACAAAAGCAACTTTTAACAATTGCTAGAGCTTTCTTAAAAGATCCTAAGCTAT
TGATACTTGATGAGGCTACAAGTTCAGTTGATACTCGTACAGAGCTTTTAATACAAAAAGCTATGGAGAAACTTATGGAA
GGAAGAACAAGCTTTATTATAGCTCACAGACTTTCTACTATACGTGATGCAGACTTAATCCTTGTTATGAAGGATGGAGA
TATAGTTGAACAAGGAAATCATGAAGAGCTTCTAGAAAAAGGTGGATTCTATTCAAGCCTTTACAATAGCCAATTTGAAC
AAAGTAGTGCTTCATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(393-541)

ABC transporter transmembrane region (ABC_membrane)

(48-329)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

50.594

95.307

0.482

Multiple sequence alignment