Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   UTEX3055_RS06785 Genome accession   NZ_CP033061
Coordinates   1313303..1314382 (+) Length   359 a.a.
NCBI ID   WP_011243962.1    Uniprot ID   Q31KD6
Organism   Synechococcus elongatus UTEX 3055     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1308303..1319382
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UTEX3055_RS06760 glyQ 1308900..1309778 (-) 879 WP_011378472.1 glycine--tRNA ligase subunit alpha -
  UTEX3055_RS06765 - 1309893..1310843 (-) 951 WP_126147402.1 DUF4335 domain-containing protein -
  UTEX3055_RS06770 - 1310850..1311473 (-) 624 WP_039755549.1 DUF3038 domain-containing protein -
  UTEX3055_RS06775 - 1311644..1312159 (+) 516 WP_011243960.1 adenine phosphoribosyltransferase -
  UTEX3055_RS06780 - 1312166..1313161 (+) 996 WP_039755550.1 ABC transporter permease -
  UTEX3055_RS06785 pilM 1313303..1314382 (+) 1080 WP_011243962.1 type IV pilus assembly protein PilM Machinery gene
  UTEX3055_RS06790 - 1314385..1315101 (+) 717 WP_126147403.1 PilN domain-containing protein -
  UTEX3055_RS06795 - 1315098..1315892 (+) 795 WP_011378469.1 hypothetical protein -
  UTEX3055_RS06800 - 1315970..1318285 (+) 2316 WP_011378468.1 secretin N-terminal domain-containing protein -
  UTEX3055_RS06805 - 1318457..1319092 (-) 636 WP_011378467.1 peroxiredoxin -

Sequence

Protein


Download         Length: 359 a.a.        Molecular weight: 39624.35 Da        Isoelectric Point: 4.3756

>NTDB_id=281713 UTEX3055_RS06785 WP_011243962.1 1313303..1314382(+) (pilM) [Synechococcus elongatus UTEX 3055]
MVGIFSKFLGGDQSRLGVEITPERINLAHIGRKGNRLQLQDFVSVELPDGLFQDGRVLDSFSLSDLLRTAINDNRIRTKR
VSTAVPGREVITRLLPMPAELDDAELRETLINQEAALFLPFPREEADIDYLKLDYFLDADEVEKLHVLLVATRRQVTDVY
LDLFAQAGLTPDIVEVGSFALIRTIREALRQYGLQEAVILLNVEYDLTEIVIIVGGVPRFSRTIAMGTQQWQRAAAQAGI
DNTGRGIDFLQGRSFTLLEPPADLLSQALARSVTELCDEVRRSADFYLSQETDIEVAKLYVAGPGSALPTLPEFLGQRLG
LPVELVDPVEGLGLEVAENLYLPNRADVGVVLGLATRGV

Nucleotide


Download         Length: 1080 bp        

>NTDB_id=281713 UTEX3055_RS06785 WP_011243962.1 1313303..1314382(+) (pilM) [Synechococcus elongatus UTEX 3055]
GTGGTCGGCATTTTTTCTAAGTTTCTTGGTGGCGATCAATCGCGCCTTGGGGTGGAAATTACTCCAGAGCGGATCAATCT
TGCTCACATTGGCCGCAAGGGGAATCGCCTGCAGCTTCAGGATTTTGTTTCCGTGGAGCTACCGGATGGGTTGTTTCAAG
ACGGGCGCGTGCTAGATAGCTTCAGCCTGTCCGATCTGCTCCGCACCGCCATCAACGACAACCGCATCAGAACCAAAAGA
GTCTCCACTGCGGTGCCAGGACGAGAGGTGATCACCCGGCTGCTGCCCATGCCCGCGGAACTCGATGATGCCGAATTGCG
CGAGACACTGATCAATCAAGAAGCTGCTCTGTTCCTGCCCTTCCCTCGTGAAGAGGCCGACATCGACTATCTGAAACTGG
ACTATTTTCTGGACGCGGATGAGGTCGAAAAGTTGCATGTCCTGCTCGTGGCGACTCGTCGGCAGGTGACCGATGTCTAC
CTTGATCTCTTTGCCCAAGCTGGCCTGACGCCTGACATTGTGGAAGTGGGGAGCTTTGCACTAATCCGAACGATTCGCGA
GGCGCTGCGCCAGTACGGACTGCAAGAAGCGGTCATTCTCCTCAACGTGGAATATGACCTCACAGAAATCGTGATTATCG
TCGGGGGGGTGCCTCGGTTTAGCCGCACGATCGCCATGGGTACTCAGCAGTGGCAGCGGGCTGCAGCCCAAGCTGGTATC
GACAATACAGGACGGGGTATTGATTTCCTGCAGGGGCGATCGTTTACATTGCTCGAACCCCCGGCTGATCTCCTCTCTCA
AGCTCTGGCACGATCGGTCACCGAGCTCTGTGATGAAGTGCGGCGATCGGCTGACTTCTACCTCAGCCAAGAGACCGATA
TTGAAGTAGCCAAGCTCTACGTTGCAGGTCCAGGCTCAGCCTTGCCAACGCTACCCGAGTTTCTGGGGCAACGACTAGGG
CTCCCTGTAGAACTCGTCGATCCTGTCGAGGGGTTGGGGCTCGAGGTGGCGGAGAACCTTTATTTGCCAAATCGCGCTGA
TGTGGGCGTGGTGTTGGGCTTAGCCACGCGAGGAGTGTAG

Domains

Predicted by InterProScan.

Type IV pilus assembly protein PilM; (PilM_2)

(17-357)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q31KD6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Synechocystis sp. PCC 6803

46.322

100

0.474

Multiple sequence alignment