Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   D9O39_RS05045 Genome accession   NZ_CP033039
Coordinates   1026475..1028244 (-) Length   589 a.a.
NCBI ID   WP_229578695.1    Uniprot ID   -
Organism   Riemerella anatipestifer strain WH9     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1021475..1033244
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9O39_RS05025 (D9O39_05050) dinB 1021644..1022726 (-) 1083 WP_064970351.1 DNA polymerase IV -
  D9O39_RS05030 (D9O39_05055) - 1022812..1023582 (-) 771 WP_004918231.1 succinate dehydrogenase/fumarate reductase iron-sulfur subunit -
  D9O39_RS05035 (D9O39_05060) - 1023606..1025618 (-) 2013 WP_064970352.1 fumarate reductase/succinate dehydrogenase flavoprotein subunit -
  D9O39_RS05040 (D9O39_05065) - 1025683..1026351 (-) 669 WP_004918227.1 succinate dehydrogenase cytochrome b subunit -
  D9O39_RS05045 (D9O39_05070) comEC 1026475..1028244 (-) 1770 WP_229578695.1 ComEC/Rec2 family competence protein Machinery gene
  D9O39_RS05050 (D9O39_05075) - 1028349..1028771 (-) 423 WP_064970354.1 hypothetical protein -
  D9O39_RS05055 (D9O39_05080) - 1028771..1030399 (-) 1629 WP_064970355.1 acyl-CoA carboxylase subunit beta -
  D9O39_RS05060 (D9O39_05085) - 1030504..1031697 (-) 1194 WP_064964479.1 endonuclease/exonuclease/phosphatase family protein -

Sequence

Protein


Download         Length: 589 a.a.        Molecular weight: 68697.05 Da        Isoelectric Point: 10.0234

>NTDB_id=281655 D9O39_RS05045 WP_229578695.1 1026475..1028244(-) (comEC) [Riemerella anatipestifer strain WH9]
MKKQILFSLFISFSLGVFLQDLNGFSWQQLNLIATLGVISLGLIWLKVDWLVRGRIWLLNIFFLCFGVFTHYLNSEKSVL
PSVSKKEELVFKIEQKLNSTAKNKRYEITAFHQNQPFKAVLSAPKDLEELDYKHYYQSQLSLYPLESSKNNYQFDYAKYQ
ARKAVYYKAYAKDLHKAPKSELTFSEKMKQWRLELLSNIDKNEKLSQQTRAFLKGIVLADRTEVDAETNTNFRRSGLTHV
LAISGSHIAIIFGVIYMLLSLTVPAKFRTGVILFSLVLIWVFAWFIGWGSSVVRSCIMLTVYFGFVLLQRKPQVLDALAL
AGLGILMVDTQELFSVGFQLSFSAVLGIYWFNKPIIRLFPNPRNKIQKLLLYTFTMSTAAQLGTMPIVIYYFHQYSAWSI
LANLVVLPLMEFVIILSFLMTIVFGLGVYWSWLSFAYDWLIKALLWLIGFFGKIELGYFQDIPLSVWEMGVLAVRLYFLR
EILVRFRWRGFMKLMFSVLLFFGIKMGLDVRAYHDKEARWHNHYHTKVFSVLDKGKVYFWVSDKDNLEVLESYLIKPYVI
SKRAESYKVKMMSEEINEVIFNGKRYPSQ

Nucleotide


Download         Length: 1770 bp        

>NTDB_id=281655 D9O39_RS05045 WP_229578695.1 1026475..1028244(-) (comEC) [Riemerella anatipestifer strain WH9]
GTGAAAAAGCAAATTCTTTTTAGCCTCTTTATAAGTTTTTCATTAGGTGTCTTTTTGCAAGACCTTAATGGGTTCTCGTG
GCAACAGCTCAATCTTATAGCTACATTAGGAGTTATTAGCCTTGGGTTAATTTGGTTAAAAGTGGATTGGTTAGTTCGGG
GCAGAATATGGTTACTTAATATCTTTTTTCTTTGTTTTGGGGTATTTACTCATTACCTTAATTCGGAAAAATCAGTTTTG
CCGAGTGTTTCTAAAAAGGAAGAACTTGTTTTTAAAATTGAACAAAAGCTAAATTCAACGGCTAAAAATAAACGCTATGA
AATAACAGCATTTCATCAAAATCAACCTTTTAAAGCAGTTTTATCTGCGCCAAAAGATTTGGAAGAATTGGATTATAAGC
ACTACTATCAATCTCAACTTAGTTTATATCCGTTGGAGTCTTCCAAGAATAATTACCAGTTTGATTATGCCAAATATCAA
GCGAGGAAAGCTGTTTATTATAAGGCTTATGCCAAAGATTTACACAAAGCGCCAAAATCAGAGCTTACTTTCTCCGAAAA
AATGAAACAATGGCGACTGGAACTCCTTAGCAATATAGATAAAAACGAAAAACTTTCACAACAAACTAGAGCTTTCCTAA
AAGGAATTGTTTTAGCTGATAGAACGGAGGTAGATGCGGAAACTAATACTAATTTTAGGAGAAGTGGTTTAACGCATGTT
TTAGCCATTTCTGGGTCGCATATTGCAATTATCTTTGGGGTTATCTATATGCTACTGAGTTTGACTGTGCCAGCAAAATT
TAGGACAGGTGTAATATTGTTTAGTTTGGTGTTAATTTGGGTTTTTGCTTGGTTTATCGGTTGGGGGAGTTCTGTTGTTA
GGTCTTGTATTATGCTCACTGTTTATTTTGGTTTTGTTCTTTTGCAAAGAAAACCTCAAGTTTTAGACGCTTTAGCCTTA
GCAGGGCTGGGTATTCTGATGGTAGATACACAAGAACTATTTTCAGTAGGGTTTCAGTTGAGTTTTTCTGCGGTGTTGGG
GATTTATTGGTTTAATAAACCTATCATTCGTCTTTTTCCAAATCCTAGAAACAAAATTCAAAAACTATTACTTTATACTT
TTACAATGTCTACAGCGGCACAGCTTGGGACTATGCCTATTGTGATTTATTATTTCCACCAGTATTCGGCGTGGTCTATT
TTGGCTAATCTTGTAGTACTTCCTTTAATGGAATTTGTGATTATACTATCGTTTTTAATGACAATCGTTTTTGGTTTAGG
AGTTTATTGGAGTTGGTTATCTTTTGCTTATGATTGGCTAATTAAAGCCTTGCTATGGCTGATAGGCTTCTTTGGTAAAA
TAGAGTTAGGGTATTTTCAAGATATACCGTTGAGTGTTTGGGAGATGGGAGTTTTGGCGGTAAGGCTTTATTTTCTAAGA
GAAATATTGGTTCGGTTTAGATGGAGAGGTTTTATGAAGTTGATGTTTTCTGTACTTTTATTTTTCGGGATTAAAATGGG
GCTAGATGTTAGAGCTTATCACGATAAAGAAGCGAGGTGGCATAACCATTATCACACTAAGGTATTTTCTGTTTTGGATA
AAGGAAAAGTGTATTTTTGGGTGTCAGATAAAGACAATTTAGAAGTGTTAGAAAGTTATCTCATAAAACCTTATGTGATT
TCTAAAAGAGCTGAAAGCTATAAAGTAAAGATGATGTCTGAAGAAATAAATGAGGTTATTTTTAATGGAAAAAGATATCC
GTCCCAATAG

Domains

Predicted by InterProScan.

Competence protein (Competence)

(216-476)

Domain of unknown function (DUF4131) (DUF4131)

(30-173)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Riemerella anatipestifer ATCC 11845 = DSM 15868

89.474

100

0.895

Multiple sequence alignment