Detailed information NTG0281151

Bioinformatically predicted

Overview

• Name: recD2
• Type: Machinery gene
• Locus tag: C1N55_RS12685
• Genome accession: NZ_CP028083
• Coordinates: 2571002..2573491 (-)
• Length: 829 a.a.
• NCBI ID: WP_137729171.1
• Uniprot ID: A0A4P8S4K6
• Organism: Lysinibacillus sp. SGAir0095
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2566002..2578491

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C1N55_RS12660 (C1N55_12680)	-	2566752..2567435 (+)	684	WP_137730642.1	TerC family protein	-
C1N55_RS12665 (C1N55_12685)	-	2567534..2568697 (-)	1164	WP_370452525.1	MFS transporter	-
C1N55_RS12670 (C1N55_12690)	-	2568833..2569603 (-)	771	WP_137729168.1	sporulation protein	-
C1N55_RS12675 (C1N55_12695)	-	2569674..2570096 (-)	423	WP_137729169.1	DUF1801 domain-containing protein	-
C1N55_RS12680 (C1N55_12700)	-	2570221..2570877 (-)	657	WP_168193852.1	SIMPL domain-containing protein	-
C1N55_RS12685 (C1N55_12705)	recD2	2571002..2573491 (-)	2490	WP_137729171.1	ATP-dependent RecD-like DNA helicase	Machinery gene
C1N55_RS12690 (C1N55_12710)	hisA	2573667..2574425 (+)	759	WP_137729172.1	phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase	-
C1N55_RS12695 (C1N55_12715)	-	2574631..2575845 (-)	1215	WP_137729173.1	NupC/NupG family nucleoside CNT transporter	-
C1N55_RS12700 (C1N55_12720)	-	2576096..2576755 (-)	660	WP_137729174.1	lipopolysaccharide assembly protein LapB	-
C1N55_RS12705 (C1N55_12725)	mnmA	2576875..2577996 (-)	1122	WP_137729175.1	tRNA 2-thiouridine(34) synthase MnmA	-

Sequence

Protein

• Length: 829 a.a.
• Molecular weight: 92697.30 Da
• Isoelectric Point: 4.9213

>NTDB_id=281151 C1N55_RS12685 WP_137729171.1 2571002..2573491(-) (recD2) [Lysinibacillus sp. SGAir0095]
MAENLNLFEVNKLFILGRPIVSIFHNATNMYSIVRVKIQETNLQYDDKEIIVVGYFPKLNEEELYRFTGVLKTHPKYGQQ
FQVETFVKEVPATEQGIIHYLSSDLFSGIGRKTAEIIVEKLGVDAIRIIMEDPYALDSVPRLNEEKKAKIRETLEQNLGL
EKVMIKLNEWGFGPQLGMKIYQTYREETISLLTENPFRLIEDVEGVGFGRADELGSKLGITGAHPDRIKAAVLHILTNAS
LSDGHVYLDAEHVLPEVKSMLEQRQPHEIPYETISKAIIEMREESKICGEETRLYLPSLYFSEVGIASKILELLNQNGKQ
RFTKDEIRKAIGEVEDRLEVSYAETQAMAIECALNSSLMILTGGPGTGKTTVIRGFVEVYAELHGLSLNPKEYAQKEEPF
PIVLAAPTGRAAKRLAESTELPAMTIHRLLGFNGQEKEEETEREIEGRLIIIDEMSMVDTWLAHQLLKSISEGVQVVFVG
DQDQLPPVGPGQVLKDLLASKKIPTVELTDVYRQAEGSTIIELAHQIKKGNIPSTVENKTSDRSFIKASADQIASVVTQV
VKSAVAKGQSIRDIQVLAPMYKGPAGIDMLNKRIQELVNPNDDGKRKELVFGDVTYRIGDKVLQLVNQPESNIFNGDMGE
VIAIIRAKENIEKQDLLVVSYDGNEVTYQRGDLNQITLAYCCSIHKSQGSEFPTVIMPIVRGYSKMLRRNLLYTGITRAK
NFLILCGEPDVFTAGLSKTDDLLRLTSLKARLNPMEIEEVTKKAGNEQVEVSKATNEPPDIEEQQKAINVNGEILEPVLN
TDTAPYIHPLVGMNGLSPYDFLDEKESIK

Nucleotide

• Length: 2490 bp

>NTDB_id=281151 C1N55_RS12685 WP_137729171.1 2571002..2573491(-) (recD2) [Lysinibacillus sp. SGAir0095]
ATGGCAGAAAATCTTAATTTATTTGAAGTGAATAAATTGTTTATTCTTGGCCGTCCAATTGTGTCCATTTTTCATAATGC
GACAAATATGTATTCAATTGTTCGAGTAAAAATACAAGAAACAAATTTACAGTATGATGACAAGGAAATTATCGTTGTAG
GCTATTTTCCAAAATTAAACGAAGAAGAACTATATCGATTTACGGGGGTTCTAAAAACTCATCCTAAATATGGTCAGCAG
TTTCAAGTGGAAACCTTCGTTAAAGAGGTTCCAGCGACAGAACAAGGTATCATTCATTATTTATCGAGTGATTTATTTTC
AGGTATAGGTCGAAAAACTGCTGAAATAATAGTAGAAAAATTGGGAGTAGATGCGATTCGTATCATTATGGAGGATCCCT
ATGCATTAGATAGCGTTCCAAGGTTAAATGAAGAAAAGAAAGCGAAAATTCGCGAGACACTAGAACAAAATCTTGGCCTC
GAAAAGGTCATGATCAAGCTAAACGAATGGGGTTTTGGTCCACAATTAGGGATGAAAATCTATCAAACATATCGTGAAGA
AACAATCTCACTTCTTACGGAAAATCCGTTTCGGCTAATCGAGGATGTAGAGGGTGTTGGATTTGGACGGGCAGATGAGC
TGGGCAGTAAACTAGGAATCACAGGGGCACACCCAGATCGCATCAAAGCTGCGGTGTTACATATTTTAACAAACGCATCC
CTTTCTGACGGACATGTATATTTAGACGCAGAGCATGTTTTACCTGAAGTGAAATCTATGCTAGAACAACGTCAGCCACA
TGAAATACCTTATGAAACGATTTCAAAAGCGATTATTGAAATGCGGGAGGAAAGCAAAATTTGCGGAGAGGAAACTCGTC
TTTATTTGCCCTCCTTATATTTTAGTGAGGTTGGTATCGCCTCCAAAATACTAGAGCTTTTAAATCAAAACGGAAAACAG
CGATTTACCAAGGATGAAATTCGTAAGGCAATAGGAGAAGTTGAAGATCGGTTAGAGGTATCATACGCTGAAACGCAAGC
AATGGCCATTGAATGTGCCCTTAATTCTTCTCTTATGATCTTAACTGGCGGTCCAGGGACAGGGAAAACGACTGTCATTC
GCGGATTCGTTGAGGTTTATGCAGAGCTTCACGGGTTGTCATTAAATCCTAAGGAATATGCACAGAAAGAAGAGCCGTTC
CCGATTGTTCTGGCTGCACCAACCGGTAGAGCGGCAAAAAGATTAGCTGAATCTACCGAGCTTCCGGCAATGACAATCCA
TCGATTACTAGGTTTTAATGGTCAAGAAAAAGAAGAAGAGACAGAACGAGAAATCGAAGGACGACTTATCATTATTGATG
AAATGTCGATGGTTGATACTTGGTTAGCACACCAACTTCTTAAAAGTATAAGTGAAGGTGTACAGGTTGTTTTCGTAGGG
GATCAAGACCAGCTGCCTCCAGTAGGACCTGGACAGGTATTAAAGGATTTATTGGCATCAAAAAAAATCCCTACTGTTGA
ATTAACGGATGTTTACCGTCAGGCAGAAGGCTCTACGATTATTGAGTTAGCACATCAAATTAAAAAAGGGAATATTCCAA
GCACAGTAGAAAATAAAACAAGTGACCGTTCATTTATTAAAGCCTCAGCTGACCAAATTGCAAGTGTAGTTACACAGGTT
GTCAAAAGTGCGGTTGCTAAGGGGCAATCAATAAGGGATATTCAGGTGCTGGCCCCAATGTACAAGGGGCCAGCCGGTAT
TGATATGCTAAACAAGAGGATTCAGGAACTAGTTAACCCAAATGATGATGGGAAAAGAAAAGAGCTTGTCTTTGGGGACG
TTACTTATCGAATCGGAGATAAAGTATTGCAGCTTGTCAATCAACCGGAAAGTAATATTTTTAATGGCGACATGGGCGAG
GTTATTGCCATAATTCGAGCAAAGGAAAATATCGAGAAGCAAGATTTACTCGTTGTCTCCTACGATGGAAATGAGGTTAC
ATACCAGCGTGGAGATTTAAATCAAATTACCTTGGCATATTGCTGTTCGATTCACAAATCACAGGGAAGTGAATTTCCAA
CTGTTATTATGCCAATTGTTCGAGGCTATTCAAAGATGCTTCGCCGTAATCTCCTATATACGGGGATTACTAGGGCTAAG
AACTTCTTAATTCTTTGTGGTGAACCAGATGTCTTTACAGCTGGATTATCCAAAACGGATGATTTACTTCGATTGACAAG
CTTAAAAGCTAGATTAAACCCAATGGAAATCGAAGAAGTGACAAAAAAAGCTGGAAATGAACAGGTGGAAGTTTCTAAAG
CGACTAATGAACCGCCTGATATAGAAGAGCAACAGAAAGCAATCAATGTGAATGGGGAAATATTGGAACCAGTACTAAAT
ACGGATACAGCTCCATATATCCATCCCCTAGTTGGAATGAATGGTTTATCACCATATGACTTTTTAGATGAAAAGGAGAG
CATTAAATAA

Domains

Predicted by InterproScan.

• UvrD-like helicase C-terminal domain (UvrD_C_2) (679-726)

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (590-650)

• AAA domain (AAA_30) (342-548)

• Helix-hairpin-helix containing domain (HHH_RecD2) (159-247)

3D structure

• AlphaFold DB: A0A4P8S4K6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD2	Bacillus subtilis subsp. subtilis str. 168	52.723	97.467	0.514