Detailed information    

insolico Bioinformatically predicted

Overview

Name   proC   Type   Machinery gene
Locus tag   D4G81_RS06300 Genome accession   NZ_CP032913
Coordinates   1316888..1317661 (+) Length   257 a.a.
NCBI ID   WP_139524748.1    Uniprot ID   -
Organism   Helicobacter pylori strain 5-A-EK1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1311888..1322661
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4G81_RS06295 hopL 1313181..1316873 (+) 3693 WP_139524747.1 Hop family outer membrane protein HopL -
  D4G81_RS06300 proC 1316888..1317661 (+) 774 WP_139524748.1 pyrroline-5-carboxylate reductase Machinery gene
  D4G81_RS06305 - 1317690..1318224 (+) 535 Protein_1199 Fic/DOC family protein -
  D4G81_RS06310 ybeY 1318468..1318890 (-) 423 WP_128004564.1 rRNA maturation RNase YbeY -
  D4G81_RS06315 - 1318945..1319439 (-) 495 WP_000516075.1 flavodoxin -
  D4G81_RS06320 - 1319531..1320112 (-) 582 WP_001154564.1 DedA family protein -
  D4G81_RS06325 ccoS 1320237..1320428 (+) 192 WP_001090958.1 cbb3-type cytochrome oxidase assembly protein CcoS -
  D4G81_RS06330 - 1320455..1321423 (+) 969 WP_139524749.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28236.01 Da        Isoelectric Point: 9.3542

>NTDB_id=281132 D4G81_RS06300 WP_139524748.1 1316888..1317661(+) (proC) [Helicobacter pylori strain 5-A-EK1]
MEILQFIGYGNMAQAILEGSHEILSKRFILEITGRNPEKIAPFLQEKNIQAQIVPYKDAIDIHQKFVFLLFKPYNLKDFN
YQGQAKSVLSALAGVNFEALSNAINSLHYLKCMPNIASKFALSSTAVCEKSVMPSISEKALSIIESFGNCVRVGNEEQVD
SSVATNGSALAFLSLVASSLKDAGIREGLNAKDSLELVKMSFKGFAKLLEKERPEMIIEQICTPKGATIEGLSVLEKKGV
RGAFIKACRKSVKKIRL

Nucleotide


Download         Length: 774 bp        

>NTDB_id=281132 D4G81_RS06300 WP_139524748.1 1316888..1317661(+) (proC) [Helicobacter pylori strain 5-A-EK1]
ATGGAAATCTTACAATTCATCGGCTATGGGAACATGGCTCAAGCGATTTTAGAAGGCTCTCATGAGATCTTATCCAAGCG
TTTTATTTTAGAGATTACCGGGCGAAACCCTGAAAAAATCGCCCCTTTTTTACAAGAAAAAAACATTCAAGCTCAAATCG
TGCCTTACAAAGACGCTATTGATATACACCAAAAATTCGTGTTTTTATTGTTTAAGCCTTACAACCTTAAGGATTTTAAT
TATCAAGGGCAAGCCAAAAGCGTTTTGAGCGCTTTAGCCGGGGTAAATTTTGAAGCTTTAAGCAATGCGATTAATTCTTT
ACATTACTTAAAATGCATGCCTAACATTGCGAGCAAGTTCGCCCTTTCTTCTACGGCGGTGTGCGAAAAATCGGTTATGC
CTTCAATAAGTGAGAAAGCTTTGAGCATTATTGAGAGTTTTGGGAATTGCGTGCGAGTGGGCAATGAAGAGCAGGTGGAT
TCTAGCGTGGCGACAAACGGGAGCGCGCTCGCGTTTTTAAGCTTGGTAGCGAGCAGTTTGAAAGACGCCGGCATTAGGGA
GGGCTTGAACGCTAAAGATTCTTTAGAATTGGTGAAAATGAGTTTTAAAGGCTTTGCCAAGCTGTTAGAAAAAGAACGCC
CAGAAATGATTATAGAGCAAATTTGCACCCCTAAAGGCGCAACGATTGAAGGCTTGAGCGTTTTAGAAAAAAAGGGGGTT
AGGGGAGCGTTCATCAAAGCATGCCGCAAGAGCGTGAAAAAAATACGCCTCTAA

Domains

Predicted by InterProScan.

NADP oxidoreductase coenzyme F420-dependent (F420_oxidored)

(4-94)

Pyrroline-5-carboxylate reductase dimerisation (P5CR_dimer)

(156-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  proC Campylobacter jejuni subsp. jejuni 81-176

37.008

98.833

0.366