Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   D4G81_RS00960 Genome accession   NZ_CP032913
Coordinates   202128..202388 (-) Length   86 a.a.
NCBI ID   WP_000602756.1    Uniprot ID   -
Organism   Helicobacter pylori strain 5-A-EK1     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 197128..207388
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4G81_RS00945 - 197691..199625 (-) 1935 WP_139524909.1 type IA DNA topoisomerase -
  D4G81_RS00950 - 199618..202115 (-) 2498 Protein_179 VirB4 family type IV secretion system protein -
  D4G81_RS00960 comB3 202128..202388 (-) 261 WP_000602756.1 hypothetical protein Machinery gene
  D4G81_RS00965 - 202389..202691 (-) 303 WP_000649845.1 TrbC/VirB2 family protein -
  D4G81_RS00970 - 202681..204597 (-) 1917 WP_139523911.1 toprim domain-containing protein -
  D4G81_RS00975 - 204609..205373 (-) 765 WP_139523912.1 hypothetical protein -
  D4G81_RS00980 groL 205702..207324 (-) 1623 WP_139523913.1 chaperonin GroEL -

Sequence

Protein


Download         Length: 86 a.a.        Molecular weight: 10154.04 Da        Isoelectric Point: 4.6082

>NTDB_id=281099 D4G81_RS00960 WP_000602756.1 202128..202388(-) (comB3) [Helicobacter pylori strain 5-A-EK1]
MILNYVETINVREISKKEKFLKLNMNSWIISFLSASFLFVWSLLYGVVLLVALITMFYILEFFDEDITNIILANLTLKND
TKEYYA

Nucleotide


Download         Length: 261 bp        

>NTDB_id=281099 D4G81_RS00960 WP_000602756.1 202128..202388(-) (comB3) [Helicobacter pylori strain 5-A-EK1]
ATGATTTTAAATTATGTAGAGACCATCAATGTTAGAGAAATATCTAAAAAAGAGAAGTTTTTAAAGCTTAATATGAATAG
TTGGATCATTTCTTTTTTGAGCGCTTCTTTCTTATTTGTGTGGTCTTTATTATATGGCGTGGTGCTATTGGTGGCATTAA
TAACAATGTTTTACATACTAGAATTTTTTGATGAAGATATTACAAACATTATTTTGGCAAACCTAACGCTAAAAAATGAC
ACTAAAGAATATTATGCTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

44.828

100

0.453