Detailed information    

insolico Bioinformatically predicted

Overview

Name   proC   Type   Machinery gene
Locus tag   D4H18_RS01870 Genome accession   NZ_CP032912
Coordinates   360092..360865 (-) Length   257 a.a.
NCBI ID   WP_139522570.1    Uniprot ID   -
Organism   Helicobacter pylori strain 13-A-EK8     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 355092..365865
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4H18_RS01835 - 355328..356488 (+) 1161 WP_139522567.1 HP1165 family MFS efflux transporter -
  D4H18_RS01840 - 356496..357470 (-) 975 WP_139522568.1 NAD(P)/FAD-dependent oxidoreductase -
  D4H18_RS01845 ccoS 357494..357685 (-) 192 WP_001090948.1 cbb3-type cytochrome oxidase assembly protein CcoS -
  D4H18_RS01850 - 357811..358392 (+) 582 WP_121100962.1 DedA family protein -
  D4H18_RS01855 - 358484..358978 (+) 495 WP_000516071.1 flavodoxin -
  D4H18_RS01860 ybeY 359031..359459 (+) 429 WP_139522569.1 rRNA maturation RNase YbeY -
  D4H18_RS01865 - 359542..360064 (-) 523 Protein_354 Fic family protein -
  D4H18_RS01870 proC 360092..360865 (-) 774 WP_139522570.1 pyrroline-5-carboxylate reductase Machinery gene
  D4H18_RS01875 hopL 360879..364544 (-) 3666 WP_139522571.1 Hop family outer membrane protein HopL -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28171.79 Da        Isoelectric Point: 8.6056

>NTDB_id=281059 D4H18_RS01870 WP_139522570.1 360092..360865(-) (proC) [Helicobacter pylori strain 13-A-EK8]
MEILQFIGYGNMAQAILEGTHETLSKRFILEITGRNPEKIAPFLQEKNIQAQIVPYKNAIDIHQKFVFLLFKPYNLKDFN
YQGQAQSVLSALAGVNFEALSNAINSLHYLKCMPNIASKFALSSTAVCEKSVAPSISEKALNIIESFGNCVRVGNEEQVD
ASIATNGSALAFLSLVASGLKDAGIREGLNAKDSLELVKMSFKGFAKLLEKERPEMIIEQICTPKGATIEGLSVLEKKGV
RGAFIKACHESVKKMRL

Nucleotide


Download         Length: 774 bp        

>NTDB_id=281059 D4H18_RS01870 WP_139522570.1 360092..360865(-) (proC) [Helicobacter pylori strain 13-A-EK8]
ATGGAAATCTTACAATTCATCGGCTATGGGAATATGGCTCAAGCGATTTTAGAAGGCACTCATGAAACTTTATCCAAGCG
TTTTATTTTAGAAATTACCGGGCGAAACCCTGAAAAAATCGCTCCCTTTTTACAAGAAAAAAACATTCAAGCCCAGATCG
TGCCTTACAAAAACGCTATTGACATACACCAAAAATTCGTGTTTTTACTTTTTAAACCTTATAACCTTAAAGATTTTAAT
TATCAAGGGCAAGCCCAAAGCGTTTTGAGTGCACTAGCTGGCGTAAATTTTGAAGCTTTAAGCAATGCGATTAATTCTTT
GCATTACTTAAAATGCATGCCCAATATTGCGAGCAAGTTCGCCCTTTCTTCTACAGCGGTGTGTGAAAAATCGGTTGCAC
CTTCAATAAGCGAGAAAGCTTTGAATATTATTGAGAGTTTTGGGAATTGCGTGCGAGTGGGCAATGAAGAGCAGGTGGAT
GCCAGTATAGCGACCAATGGGAGCGCGCTCGCTTTTTTGAGCTTGGTAGCGAGCGGTTTGAAAGACGCCGGCATTAGAGA
GGGCTTGAACGCTAAAGATTCTTTAGAGTTGGTAAAAATGAGTTTTAAAGGCTTTGCCAAGCTGTTAGAAAAAGAACGCC
CAGAGATGATTATAGAGCAAATTTGCACCCCTAAAGGCGCAACGATTGAAGGCTTGAGCGTTTTAGAAAAAAAGGGGGTT
AGGGGAGCGTTTATAAAAGCATGCCATGAAAGCGTGAAAAAAATGCGCCTCTAA

Domains

Predicted by InterProScan.

NADP oxidoreductase coenzyme F420-dependent (F420_oxidored)

(4-94)

Pyrroline-5-carboxylate reductase dimerisation (P5CR_dimer)

(156-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  proC Campylobacter jejuni subsp. jejuni 81-176

36.614

98.833

0.362