Detailed information    

insolico Bioinformatically predicted

Overview

Name   proC   Type   Machinery gene
Locus tag   D4H43_RS01595 Genome accession   NZ_CP032911
Coordinates   307143..307916 (-) Length   257 a.a.
NCBI ID   WP_139543798.1    Uniprot ID   -
Organism   Helicobacter pylori strain 19-A-EK3     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 302143..312916
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4H43_RS01560 - 302210..303370 (+) 1161 WP_139543796.1 HP1165 family MFS efflux transporter -
  D4H43_RS01565 - 303377..304348 (-) 972 WP_139543797.1 NAD(P)/FAD-dependent oxidoreductase -
  D4H43_RS01570 ccoS 304384..304575 (-) 192 WP_001090949.1 cbb3-type cytochrome oxidase assembly protein CcoS -
  D4H43_RS01575 - 304700..305281 (+) 582 WP_108328915.1 DedA family protein -
  D4H43_RS01580 - 305373..305867 (+) 495 WP_000516050.1 flavodoxin -
  D4H43_RS01585 ybeY 305921..306343 (+) 423 WP_097717670.1 rRNA maturation RNase YbeY -
  D4H43_RS01590 - 306587..307115 (-) 529 Protein_302 Fic/DOC family protein -
  D4H43_RS01595 proC 307143..307916 (-) 774 WP_139543798.1 pyrroline-5-carboxylate reductase Machinery gene
  D4H43_RS01600 hopL 307930..311598 (-) 3669 WP_139548775.1 Hop family outer membrane protein HopL -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28251.85 Da        Isoelectric Point: 6.9443

>NTDB_id=281013 D4H43_RS01595 WP_139543798.1 307143..307916(-) (proC) [Helicobacter pylori strain 19-A-EK3]
MEILQFIGYGNMAQAILEGSHEILSKRFILEITGRNPEKIAPFLQEKNIQAQIVPYKDAIDIHQKFVFLLFKPYNLKDFN
YQGQAQSVLSALAGVNFEALSNAINSLHYLKCMPNIASKFALSSTAVCEKSPMPLISQKALNIIESFGNCVRVGNEELVD
ASVATNGSALAFLSLVASSLKDAGIREGLNARDSLELVEMSFKGFAKLLEKERPEMVIEQICTPKGATIEGLSVLEKKGV
RGAFIEACHESVKKMHL

Nucleotide


Download         Length: 774 bp        

>NTDB_id=281013 D4H43_RS01595 WP_139543798.1 307143..307916(-) (proC) [Helicobacter pylori strain 19-A-EK3]
ATGGAAATCTTACAATTCATCGGCTATGGTAATATGGCTCAAGCGATTTTAGAAGGCTCTCATGAAATTTTATCCAAGCG
TTTTATTTTAGAGATTACCGGGCGAAACCCTGAAAAAATCGCCCCTTTTTTACAAGAAAAAAACATTCAAGCTCAAATCG
TGCCTTACAAAGACGCTATTGATATACACCAAAAATTCGTGTTTTTACTTTTCAAGCCTTATAACCTTAAGGATTTTAAT
TATCAAGGGCAAGCCCAAAGCGTTTTGAGCGCGCTAGCTGGCGTAAATTTTGAAGCTTTAAGCAATGCGATTAATTCTTT
ACATTACTTAAAATGCATGCCTAACATTGCGAGCAAGTTCGCCCTTTCTTCTACAGCGGTGTGCGAAAAATCGCCCATGC
CCTTAATAAGCCAAAAGGCTTTGAATATTATTGAGAGTTTTGGGAATTGCGTGCGAGTGGGCAATGAAGAATTGGTGGAT
GCCAGCGTGGCGACAAACGGGAGTGCGCTCGCGTTTTTGAGCTTGGTAGCGAGCAGTTTGAAAGATGCCGGTATTAGAGA
GGGTTTGAACGCTAGAGATTCTTTAGAATTGGTGGAAATGAGTTTTAAAGGCTTTGCCAAGTTGTTAGAAAAAGAACGCC
CCGAAATGGTTATAGAGCAAATTTGCACCCCTAAAGGTGCAACGATTGAAGGCTTGAGCGTTTTAGAAAAAAAGGGGGTT
AGGGGAGCGTTTATAGAAGCTTGCCATGAAAGCGTGAAAAAAATGCACCTCTAA

Domains

Predicted by InterProScan.

Pyrroline-5-carboxylate reductase dimerisation (P5CR_dimer)

(156-254)

NADP oxidoreductase coenzyme F420-dependent (F420_oxidored)

(4-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  proC Campylobacter jejuni subsp. jejuni 81-176

37.008

98.833

0.366

Multiple sequence alignment