Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   C7N77_RS06130 Genome accession   NZ_CP027856
Coordinates   1265381..1266820 (+) Length   479 a.a.
NCBI ID   WP_106885626.1    Uniprot ID   -
Organism   Aeromonas rivipollensis strain KN-Mc-11N1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1260381..1271820
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7N77_RS06100 (C7N77_06100) mlaF 1260959..1261759 (-) 801 WP_025328535.1 phospholipid ABC transporter ATP-binding protein MlaF -
  C7N77_RS06105 (C7N77_06105) - 1261966..1262961 (+) 996 WP_025328534.1 KpsF/GutQ family sugar-phosphate isomerase -
  C7N77_RS06110 (C7N77_06110) kdsC 1262961..1263515 (+) 555 WP_106885625.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  C7N77_RS06115 (C7N77_06115) lptC 1263512..1264072 (+) 561 WP_042649050.1 LPS export ABC transporter periplasmic protein LptC -
  C7N77_RS06120 (C7N77_06120) lptA 1264059..1264577 (+) 519 WP_025328531.1 lipopolysaccharide transport periplasmic protein LptA -
  C7N77_RS06125 (C7N77_06125) lptB 1264590..1265315 (+) 726 WP_010675872.1 LPS export ABC transporter ATP-binding protein -
  C7N77_RS06130 (C7N77_06130) rpoN/rpoN1 1265381..1266820 (+) 1440 WP_106885626.1 RNA polymerase factor sigma-54 Machinery gene
  C7N77_RS06135 (C7N77_06135) hpf 1266841..1267128 (+) 288 WP_005305957.1 ribosome hibernation promoting factor -
  C7N77_RS06140 (C7N77_06140) ptsN 1267131..1267577 (+) 447 WP_010675870.1 PTS IIA-like nitrogen regulatory protein PtsN -
  C7N77_RS06145 (C7N77_06145) rapZ 1267618..1268484 (+) 867 WP_106885627.1 RNase adapter RapZ -
  C7N77_RS06150 (C7N77_06150) npr 1268505..1268777 (+) 273 WP_005331359.1 PTS phosphocarrier protein NPr -
  C7N77_RS06155 (C7N77_06155) - 1268796..1270700 (-) 1905 WP_106885628.1 BglG family transcription antiterminator -
  C7N77_RS06160 (C7N77_06160) dagF 1270807..1271547 (-) 741 WP_106885629.1 2-dehydro-3-deoxy-phosphogluconate aldolase -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 53778.73 Da        Isoelectric Point: 4.4177

>NTDB_id=280977 C7N77_RS06130 WP_106885626.1 1265381..1266820(+) (rpoN/rpoN1) [Aeromonas rivipollensis strain KN-Mc-11N1]
MKPTLQLRLGQSLTMTPQLQQAIRLLQLSTLELQQEIQQALDNNPLLEQEENEAQETSPIEPQDASQLDSSDAMAQDKMP
DELPVDTTWDEVYSAGTAQSAGPIHDGEDSVYQGETTENLQDYLLWQMRLTPFSDLDAAIALAIIDAIDESGYLTVSLED
IQAAVSSEEVEVELDEVEAVLKRVQHFDPVGIAARSVQECLLIQLGQYSPDLPWLNEAREVIREHMDLLGNRDYRTLARK
TRLKESDLKEVLDLIQQLEPRPGNGIIQSESQYVIPDVSVVKKGSKWVVELNPDSAPRIRVNEAYAAMARNARSSTDTQF
IRSHLQEAKWFIKSLESRNDTLLKVASCIVEQQQGFFEYGEEAMKPMVLNDIAEAVEMHESTISRVTTQKYMHTPRGIFE
LKFFFSSHVNTEGGGECSSTAIRALIKKLVTAENPAKPLSDSKIADLLAEQGIMVARRTIAKYRESLLIPPSNQRKRLV

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=280977 C7N77_RS06130 WP_106885626.1 1265381..1266820(+) (rpoN/rpoN1) [Aeromonas rivipollensis strain KN-Mc-11N1]
ATGAAGCCGACATTACAGTTGCGCCTCGGTCAGTCACTGACCATGACGCCACAATTACAACAAGCGATTCGTCTGCTCCA
GCTCTCCACCCTGGAACTCCAGCAGGAAATTCAGCAAGCGCTCGATAATAACCCCTTGCTGGAGCAGGAGGAGAATGAGG
CGCAGGAAACCAGCCCGATAGAGCCCCAGGACGCCAGTCAACTCGACTCCAGCGATGCCATGGCGCAGGACAAAATGCCG
GATGAACTGCCGGTGGACACCACCTGGGATGAGGTCTACTCCGCCGGTACGGCCCAGAGCGCCGGCCCCATCCATGATGG
GGAAGACAGCGTCTATCAAGGGGAAACCACCGAGAACCTGCAGGACTATCTGCTGTGGCAGATGCGCCTGACGCCATTCA
GCGATCTGGATGCCGCCATCGCCCTCGCCATCATCGATGCCATCGATGAGTCCGGCTACCTGACCGTCTCTCTCGAAGAT
ATTCAGGCTGCAGTCAGCAGTGAAGAGGTAGAAGTTGAACTGGATGAAGTGGAAGCCGTGCTCAAGCGGGTGCAGCATTT
CGATCCGGTTGGCATAGCCGCGCGCTCGGTGCAGGAGTGTCTGCTGATCCAGCTTGGCCAGTACTCGCCGGATCTGCCCT
GGCTCAATGAGGCAAGGGAGGTGATCCGCGAGCACATGGATCTGCTCGGAAACCGCGACTACCGCACCCTGGCACGCAAG
ACCCGGCTCAAGGAGAGCGACCTCAAGGAGGTGCTGGATCTCATCCAGCAGCTGGAGCCCAGACCCGGCAATGGCATCAT
CCAGAGTGAATCGCAATACGTGATCCCGGATGTATCCGTGGTCAAGAAGGGCAGCAAGTGGGTGGTTGAGCTCAACCCGG
ATTCGGCGCCACGCATCCGTGTCAACGAGGCCTATGCGGCCATGGCACGCAATGCCCGTAGCAGCACGGATACCCAGTTC
ATTCGCTCCCATTTGCAGGAAGCCAAGTGGTTCATCAAGAGCCTGGAGAGTCGAAACGACACCCTGCTCAAGGTGGCCAG
CTGCATCGTCGAGCAGCAGCAGGGCTTCTTCGAATACGGGGAAGAGGCCATGAAGCCCATGGTACTCAACGACATCGCCG
AGGCGGTGGAGATGCACGAGTCGACGATTTCACGGGTGACGACCCAGAAGTATATGCATACGCCCCGTGGCATCTTTGAA
CTGAAGTTTTTTTTCTCCAGTCATGTCAACACGGAGGGAGGAGGAGAGTGCTCATCGACCGCAATTCGCGCCCTGATCAA
GAAGCTGGTGACGGCCGAAAACCCGGCCAAACCGCTTAGTGATAGCAAGATCGCGGATTTGCTGGCCGAACAGGGTATTA
TGGTGGCGAGACGCACGATCGCAAAGTACCGTGAATCCTTGTTGATCCCGCCATCCAATCAGCGCAAACGCCTGGTTTAG

Domains

Predicted by InterProScan.

Sigma-54, DNA binding domain (Sigma54_DBD)

(319-477)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-305)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

46.471

100

0.495

Multiple sequence alignment