Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   D4I01_RS07755 Genome accession   NZ_CP032909
Coordinates   1575378..1575638 (-) Length   86 a.a.
NCBI ID   WP_000602757.1    Uniprot ID   B5Z817
Organism   Helicobacter pylori strain 21-A-EK1     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1570378..1580638
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4I01_RS08040 - 1570812..1570940 (-) 129 WP_000243255.1 hypothetical protein -
  D4I01_RS07745 - 1570940..1572874 (-) 1935 WP_139543540.1 type IA DNA topoisomerase -
  D4I01_RS07750 - 1572867..1575365 (-) 2499 WP_139543541.1 VirB4 family type IV secretion system protein -
  D4I01_RS07755 comB3 1575378..1575638 (-) 261 WP_000602757.1 hypothetical protein Machinery gene
  D4I01_RS07760 - 1575639..1575941 (-) 303 WP_000649846.1 TrbC/VirB2 family protein -
  D4I01_RS07765 - 1575931..1577847 (-) 1917 WP_139543542.1 toprim domain-containing protein -
  D4I01_RS07770 - 1577858..1578622 (-) 765 WP_139543543.1 hypothetical protein -
  D4I01_RS07775 thyX 1578713..1579339 (-) 627 WP_021176828.1 FAD-dependent thymidylate synthase -

Sequence

Protein


Download         Length: 86 a.a.        Molecular weight: 10140.01 Da        Isoelectric Point: 4.6082

>NTDB_id=280970 D4I01_RS07755 WP_000602757.1 1575378..1575638(-) (comB3) [Helicobacter pylori strain 21-A-EK1]
MILNYVETINVREISKKEKFLKLNMNSWIISFLSASFLFVWSLLYGVVLLVALVTMFYILEFFDEDITNIILANLTLKND
TKEYYA

Nucleotide


Download         Length: 261 bp        

>NTDB_id=280970 D4I01_RS07755 WP_000602757.1 1575378..1575638(-) (comB3) [Helicobacter pylori strain 21-A-EK1]
ATGATTTTAAATTATGTGGAGACCATCAATGTTAGAGAAATATCTAAAAAAGAGAAGTTTTTAAAGCTTAATATGAATAG
TTGGATCATTTCTTTTTTGAGCGCTTCTTTCTTATTTGTGTGGTCTTTATTATATGGCGTGGTGCTATTGGTAGCATTGG
TAACAATGTTTTACATACTAGAATTTTTTGATGAAGATATTACAAACATTATTTTGGCAAACCTAACGCTAAAAAATGAC
ACTAAAGAATATTATGCTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B5Z817

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

44.828

100

0.453