Detailed information    

insolico Bioinformatically predicted

Overview

Name   proC   Type   Machinery gene
Locus tag   D4I31_RS06710 Genome accession   NZ_CP032908
Coordinates   1397490..1398263 (+) Length   257 a.a.
NCBI ID   WP_139535098.1    Uniprot ID   -
Organism   Helicobacter pylori strain 23-A-EK1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1392490..1403263
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4I31_RS06705 hopL 1393773..1397477 (+) 3705 WP_139535097.1 Hop family outer membrane protein HopL -
  D4I31_RS06710 proC 1397490..1398263 (+) 774 WP_139535098.1 pyrroline-5-carboxylate reductase Machinery gene
  D4I31_RS06715 - 1398291..1398818 (+) 528 WP_139535099.1 Fic family protein -
  D4I31_RS06720 - 1398833..1399597 (-) 765 WP_139535100.1 TauD/TfdA family dioxygenase -
  D4I31_RS06725 - 1399603..1400061 (-) 459 WP_139535101.1 hypothetical protein -
  D4I31_RS06730 ybeY 1400157..1400585 (-) 429 WP_139535102.1 rRNA maturation RNase YbeY -
  D4I31_RS06735 - 1400638..1401132 (-) 495 WP_000516077.1 flavodoxin -
  D4I31_RS06740 - 1401223..1401804 (-) 582 WP_001154564.1 DedA family protein -
  D4I31_RS06745 ccoS 1401929..1402120 (+) 192 WP_001090948.1 cbb3-type cytochrome oxidase assembly protein CcoS -
  D4I31_RS06750 - 1402145..1403116 (+) 972 WP_139535103.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28226.93 Da        Isoelectric Point: 8.0300

>NTDB_id=280926 D4I31_RS06710 WP_139535098.1 1397490..1398263(+) (proC) [Helicobacter pylori strain 23-A-EK1]
MEILQFIGYGNMAQAILEGSHEILSKRFILEITGRNPEKIAPFLQEKNIQAQIVPYKDAIDIHQKFVFLLFKPYNLKDFN
YQGQAQSVLSALAGVGFKALSDAIDSLHYLKCMPNIASKFALSSTAVCEKSPMPLISQKALNIIESFGNCVRVGNEEQVD
ASIATNGSALAFLSLVASGLKDAGIREGLNARDSLELVEMSFKGFAKLLEKERPEMIIEQICTPKGATIEGLSVLEKKGV
RGAFIKACHESVKKMRL

Nucleotide


Download         Length: 774 bp        

>NTDB_id=280926 D4I31_RS06710 WP_139535098.1 1397490..1398263(+) (proC) [Helicobacter pylori strain 23-A-EK1]
ATGGAAATCTTACAATTCATCGGCTATGGGAACATGGCTCAAGCGATCTTAGAAGGCTCTCATGAAATTTTATCCAAGCG
TTTTATTTTAGAAATTACCGGGCGAAACCCTGAAAAAATCGCCCCCTTTTTACAAGAAAAAAACATTCAAGCTCAAATCG
TGCCTTACAAAGATGCTATTGATATACACCAAAAATTCGTGTTTTTACTTTTTAAGCCTTATAACCTTAAGGATTTTAAT
TATCAAGGGCAAGCTCAAAGCGTTTTGAGCGCACTAGCTGGCGTGGGTTTTAAAGCTTTAAGCGATGCGATAGATTCTTT
GCATTACTTAAAATGCATGCCCAATATCGCGAGCAAGTTCGCCCTTTCTTCTACGGCGGTGTGCGAAAAATCACCCATGC
CCTTAATAAGCCAAAAGGCTTTGAATATTATTGAGAGTTTTGGGAATTGCGTGCGAGTGGGCAATGAAGAGCAAGTGGAT
GCCAGTATAGCGACCAATGGGAGCGCGCTCGCGTTTTTAAGCTTGGTAGCGAGCGGTTTGAAAGACGCCGGCATTAGAGA
GGGCTTGAACGCTAGAGATTCTTTAGAATTGGTGGAAATGAGTTTTAAAGGCTTTGCCAAGCTGTTAGAAAAAGAACGCC
CCGAAATGATTATAGAGCAAATTTGCACCCCTAAAGGCGCAACGATTGAAGGCTTGAGCGTTTTAGAAAAAAAGGGGGTT
AGGGGAGCGTTTATAAAAGCATGCCATGAAAGCGTGAAAAAAATGCGTCTCTAA

Domains

Predicted by InterProScan.

Pyrroline-5-carboxylate reductase dimerisation (P5CR_dimer)

(156-255)

NADP oxidoreductase coenzyme F420-dependent (F420_oxidored)

(4-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  proC Campylobacter jejuni subsp. jejuni 81-176

36.614

98.833

0.362