Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   HSM_RS06630 Genome accession   NC_010519
Coordinates   1462070..1463410 (-) Length   446 a.a.
NCBI ID   WP_012340441.1    Uniprot ID   -
Organism   Histophilus somni 2336     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1457070..1468410
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HSM_RS06605 (HSM_1277) - 1457077..1457802 (-) 726 WP_012340436.1 class I SAM-dependent methyltransferase -
  HSM_RS06610 (HSM_1278) gloB 1457836..1458537 (+) 702 WP_012340437.1 hydroxyacylglutathione hydrolase -
  HSM_RS06615 (HSM_1279) hemA 1458648..1459949 (+) 1302 WP_012340438.1 glutamyl-tRNA reductase -
  HSM_RS06620 (HSM_1280) - 1459961..1461355 (-) 1395 WP_012340439.1 MATE family efflux transporter -
  HSM_RS06625 (HSM_1281) - 1461409..1462017 (+) 609 WP_012340440.1 riboflavin synthase -
  HSM_RS06630 (HSM_1282) rarA 1462070..1463410 (-) 1341 WP_012340441.1 replication-associated recombination protein A Machinery gene
  HSM_RS06635 (HSM_1283) lolA 1463476..1464090 (-) 615 WP_012340442.1 outer membrane lipoprotein chaperone LolA -
  HSM_RS06640 (HSM_1284) - 1464302..1464715 (+) 414 WP_012340443.1 YhcB family protein -
  HSM_RS06645 (HSM_1285) - 1464844..1466232 (+) 1389 WP_041605098.1 Do family serine endopeptidase -
  HSM_RS06650 (HSM_1286) - 1466317..1466793 (-) 477 WP_012340445.1 low molecular weight protein-tyrosine-phosphatase -
  HSM_RS06655 (HSM_1287) - 1466926..1467648 (+) 723 WP_011608971.1 phosphotransferase -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 49961.18 Da        Isoelectric Point: 7.6009

>NTDB_id=28091 HSM_RS06630 WP_012340441.1 1462070..1463410(-) (rarA) [Histophilus somni 2336]
MSTFSLDFSHSAFQPLAAKMRPQTLKQYCGQEHLIGAGKPLYKAIENGHIHSMIFWGPPGTGKTTLAEIIAQQIHAQVER
ISAVTAGVKEIRESIERAKQNRLMGQQTILFVDEVHRFNKTQQDAFLPHIENGTIIFIGATTENPSFELNNALLSRVKVY
ILKPLTTSNIVTVLQNAIQDAEQGLGKERLIFAENVLETLAEYVNGDARLALNCLELMVDMADETEKGKLINHRLLTEVL
GERQARFDKQGDRFYDLISALHKSIRGSAPDAALYWYARIITAGGDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCF
TRVGAAEGERAIAQAIVYLAVAPKSNAVYVAFKQAKKLAKEMPDYDVPVHLRNAPTHLMKELGYGAEYRYAHDEPNAYAA
GENYFPKELKDTKFYFPTDRGLEIQLKEKLARLHNLDEQSTKKRYK

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=28091 HSM_RS06630 WP_012340441.1 1462070..1463410(-) (rarA) [Histophilus somni 2336]
ATGTCCACTTTTTCACTTGATTTCTCTCACTCGGCATTTCAACCCTTAGCCGCAAAAATGAGACCGCAAACACTGAAGCA
ATATTGTGGCCAAGAACATTTAATCGGAGCTGGAAAGCCACTATATAAAGCCATTGAAAACGGACATATTCATTCTATGA
TTTTTTGGGGCCCGCCTGGTACAGGAAAAACAACGCTGGCAGAGATTATTGCACAACAAATTCATGCCCAAGTTGAGCGT
ATTTCTGCAGTTACCGCCGGAGTGAAAGAGATTCGGGAAAGTATTGAACGGGCAAAACAAAACCGTTTAATGGGTCAACA
AACTATTTTATTTGTTGATGAAGTTCACCGTTTTAATAAAACCCAACAAGATGCTTTTTTGCCTCATATTGAAAACGGCA
CTATCATTTTTATAGGTGCAACCACAGAAAATCCATCATTTGAATTAAATAATGCGTTACTCTCTCGTGTCAAAGTTTAT
ATTTTGAAACCTTTAACTACATCTAATATTGTGACAGTGTTACAAAATGCCATCCAAGATGCAGAGCAAGGATTGGGAAA
AGAGCGGTTGATTTTCGCTGAAAATGTTCTTGAAACCTTAGCTGAATATGTCAATGGGGATGCCCGTTTAGCACTAAATT
GTTTAGAACTCATGGTGGATATGGCAGATGAAACAGAAAAAGGGAAATTGATTAATCATCGTCTCCTAACTGAAGTATTA
GGGGAACGACAGGCTCGCTTCGACAAGCAAGGGGATCGATTTTATGATCTAATTTCCGCTCTACATAAATCTATTCGTGG
CTCCGCTCCCGATGCTGCTTTATATTGGTATGCTAGAATTATTACTGCCGGAGGTGATCCTCTCTATGTTGCAAGGCGTT
TATTAGCTATTGCCTCCGAAGACGTAGGCAATGCCGATCCGAGAGCAATGCAAGTAGCACTTGCAGCATGGGATTGTTTT
ACTCGAGTTGGTGCAGCTGAAGGAGAACGTGCTATCGCACAAGCGATTGTATATTTAGCTGTTGCACCTAAAAGTAACGC
TGTATATGTTGCCTTTAAACAAGCAAAAAAACTCGCAAAAGAAATGCCGGATTATGATGTACCGGTACATTTGCGTAATG
CACCAACTCATTTAATGAAAGAGTTGGGATATGGAGCAGAATATCGTTATGCTCATGATGAACCTAATGCCTATGCGGCA
GGAGAAAATTATTTTCCAAAAGAATTAAAAGATACGAAATTTTATTTTCCTACAGATCGTGGACTGGAAATTCAACTTAA
AGAAAAATTAGCACGATTGCATAATTTAGATGAGCAAAGCACAAAAAAACGCTATAAATAG

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(188-266)

MgsA AAA+ ATPase C terminal (MgsA_C)

(267-433)

ATPase family associated with various cellular activities (AAA) (AAA)

(53-163)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

38.771

94.843

0.368

Multiple sequence alignment