Detailed information NTG0280907

Bioinformatically predicted

Overview

• Name: rarA
• Type: Machinery gene
• Locus tag: D4I31_RS02890
• Genome accession: NZ_CP032908
• Coordinates: 586157..587332 (-)
• Length: 391 a.a.
• NCBI ID: WP_139534367.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain 23-A-EK1
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 581157..592332

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D4I31_RS02855	-	581479..581793 (+)	315	WP_001265941.1	hypothetical protein	-
D4I31_RS02860	-	581771..582538 (+)	768	WP_033741836.1	RNA polymerase sigma factor FliA	-
D4I31_RS02865	fliM	582531..583595 (+)	1065	WP_000763567.1	flagellar motor switch protein FliM	-
D4I31_RS02870	fliY	583599..584462 (+)	864	WP_139534361.1	flagellar motor switch protein FliY	-
D4I31_RS02875	-	584489..585025 (+)	537	WP_139534363.1	YhcH/YjgK/YiaL family protein	-
D4I31_RS02880	-	585022..585525 (+)	504	WP_139534365.1	DUF2147 domain-containing protein	-
D4I31_RS02885	fur	585545..585997 (-)	453	WP_000824996.1	ferric iron uptake transcriptional regulator	-
D4I31_RS02890	rarA	586157..587332 (-)	1176	WP_139534367.1	replication-associated recombination protein A	Machinery gene
D4I31_RS02895	-	587329..587700 (-)	372	WP_000332999.1	helix-turn-helix transcriptional regulator	-
D4I31_RS02900	-	587710..588576 (-)	867	WP_139534369.1	DnaJ C-terminal domain-containing protein	-
D4I31_RS02905	-	588744..589994 (+)	1251	WP_139534371.1	outer membrane family protein	-
D4I31_RS02910	-	590101..590937 (-)	837	WP_100975008.1	5'-3' exonuclease	-
D4I31_RS02920	-	591193..592089 (-)	897	WP_079335723.1	OriC activity response regulator	-

Sequence

Protein

• Length: 391 a.a.
• Molecular weight: 43780.41 Da
• Isoelectric Point: 8.0611

>NTDB_id=280907 D4I31_RS02890 WP_139534367.1 586157..587332(-) (rarA) [Helicobacter pylori strain 23-A-EK1]
MSLTALLNPTSLEDFLGQEHLVGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIAHMLERPILLFNATDFKLEDLRL
KLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHALILGASTQDPNYSLSHAIRSRSFIFELTPLKKSDLDKLCAK
ALTLLKKQIEPGAKTYLLNNSAGDARALLNLLDLSAKIENPITLETLQSLRPHSLNDGSYSNDTHYNLTSALIKSLRGSD
ENASIYYLARLIAGGENPEFIARRLVIFASEDIGNANPNALNLASSCLFSVKQIGYPEARIILSQCVIYLACSPKSNTAY
RAIDQALDCVQKGSLYPIPKHLLPHSKDYLYPHDYNGYVKQDYLEKPLNLVSSQGIGFEKTLLEWLDKIRN

Nucleotide

• Length: 1176 bp

>NTDB_id=280907 D4I31_RS02890 WP_139534367.1 586157..587332(-) (rarA) [Helicobacter pylori strain 23-A-EK1]
ATGAGTTTGACTGCACTTTTAAACCCCACAAGCCTAGAAGATTTTTTAGGCCAAGAGCATTTAGTGGGGAAAGACGCCCC
CTTATTTAAAGCCCTACAATCCAAACACTTCCCCCACGCTTTTTTCTATGGCCCTCCTGGCGTGGGCAAAACAAGCCTGG
CTCAAATCATCGCCCACATGCTGGAGCGCCCTATTCTTTTATTCAATGCGACGGATTTTAAGCTAGAGGATTTGCGCCTT
AAGCTTAAAAATTACCAAAACACCCTTTTAAAACCCGTTGTTTTTATTGATGAAACCCACAGATTGAATAAAACCCAACA
GGAATTTTTACTCCCCATTATGGAAAAAGATCACGCTTTAATCTTAGGGGCTAGCACGCAAGATCCTAATTACAGCCTAA
GCCATGCGATCCGCTCAAGAAGTTTTATTTTTGAATTGACCCCCCTAAAAAAGAGCGATTTAGACAAGCTTTGCGCTAAA
GCTTTAACATTGCTCAAAAAACAAATAGAGCCTGGCGCTAAAACCTATCTTTTAAACAACAGCGCTGGCGACGCTAGAGC
GTTATTAAACCTTTTAGATTTGAGCGCTAAAATAGAAAATCCTATCACTTTAGAAACGCTGCAATCCTTACGGCCTCATA
GCCTAAATGACGGATCTTATAGCAATGATACGCATTATAACCTTACTAGTGCGTTAATCAAATCTTTAAGAGGGAGCGAT
GAAAACGCTTCCATCTATTATCTGGCGCGTTTGATTGCTGGCGGAGAAAACCCGGAATTTATCGCCAGAAGGCTGGTGAT
TTTTGCGAGCGAAGATATTGGTAACGCTAACCCAAACGCCCTTAATTTAGCCTCTTCTTGCTTGTTTTCAGTCAAACAAA
TCGGCTACCCTGAAGCGCGCATCATTTTAAGCCAGTGCGTGATTTATCTGGCTTGTTCGCCCAAGTCTAACACGGCTTAT
AGAGCGATCGATCAGGCTTTAGATTGCGTTCAAAAAGGCTCACTCTACCCTATTCCTAAACACCTGTTGCCTCATTCTAA
AGATTACCTTTACCCGCATGATTATAACGGCTATGTCAAACAAGATTATTTAGAAAAACCCCTAAATCTGGTTTCTTCTC
AAGGTATAGGGTTTGAAAAAACCCTTTTAGAATGGCTTGATAAGATAAGAAATTGA

Domains

Predicted by InterProScan.

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (7-117)

• AAA C-terminal domain (AAA_assoc_2) (168-237)

• MgsA AAA+ ATPase C terminal (MgsA_C) (238-389)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rarA	Bacillus subtilis subsp. subtilis str. 168	37.981	100	0.404