Detailed information    

insolico Bioinformatically predicted

Overview

Name   proC   Type   Machinery gene
Locus tag   D4J22_RS01940 Genome accession   NZ_CP032905
Coordinates   376105..376878 (-) Length   257 a.a.
NCBI ID   WP_139546936.1    Uniprot ID   -
Organism   Helicobacter pylori strain 26-A-EK1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 371105..381878
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4J22_RS01900 - 371238..372212 (-) 975 WP_139546931.1 NAD(P)/FAD-dependent oxidoreductase -
  D4J22_RS01905 ccoS 372238..372429 (-) 192 WP_001090949.1 cbb3-type cytochrome oxidase assembly protein CcoS -
  D4J22_RS01910 - 372554..373135 (+) 582 WP_139546932.1 DedA family protein -
  D4J22_RS01915 - 373227..373721 (+) 495 WP_000516050.1 flavodoxin -
  D4J22_RS01920 ybeY 373775..374203 (+) 429 WP_139546933.1 rRNA maturation RNase YbeY -
  D4J22_RS01925 - 374300..374758 (+) 459 WP_033590338.1 hypothetical protein -
  D4J22_RS01930 - 374764..375528 (+) 765 WP_139546934.1 TauD/TfdA family dioxygenase -
  D4J22_RS01935 - 375543..376076 (-) 534 WP_139546935.1 Fic/DOC family protein -
  D4J22_RS01940 proC 376105..376878 (-) 774 WP_139546936.1 pyrroline-5-carboxylate reductase Machinery gene
  D4J22_RS01945 hopL 376891..380595 (-) 3705 WP_139546937.1 Hop family outer membrane protein HopL -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28240.13 Da        Isoelectric Point: 9.3542

>NTDB_id=280767 D4J22_RS01940 WP_139546936.1 376105..376878(-) (proC) [Helicobacter pylori strain 26-A-EK1]
MEILQFIGYGNMAQAILEGAHEILSKRFILEITGRNPEKIAPFLQEKNIQAQIVPYKDAIDIHQKFVFLLFKPYNLKDFN
YQGQAKSVLSALAGVNFEALSDAINSLHYLKCMPNIASKFALSSTAVCEKSPMPLISQKALNIIESFGNCVRVGNEELVD
ASVATNGSALAFLSLVASSLKDAGIREGLNAKDSLELVKMSFKGFAKLLEKERPEMIIEQICTPKGATIEGLSVLEKKGV
RGAFIKACRKSVKKIRL

Nucleotide


Download         Length: 774 bp        

>NTDB_id=280767 D4J22_RS01940 WP_139546936.1 376105..376878(-) (proC) [Helicobacter pylori strain 26-A-EK1]
ATGGAAATCTTACAATTCATCGGCTATGGGAATATGGCTCAAGCGATTTTAGAAGGCGCTCATGAAATTTTATCCAAGCG
TTTTATTTTAGAGATTACCGGGCGAAACCCTGAAAAAATCGCCCCTTTTTTACAAGAAAAAAACATTCAAGCTCAAATCG
TGCCTTACAAAGACGCTATTGACATACACCAAAAATTCGTGTTTTTACTTTTTAAGCCTTATAACCTTAAGGATTTTAAT
TATCAAGGGCAAGCTAAAAGCGTTTTGAGCGCTTTAGCCGGGGTAAATTTTGAAGCTTTAAGTGATGCGATTAATTCTTT
ACATTACTTAAAATGCATGCCCAATATCGCGAGCAAGTTCGCCCTTTCTTCTACGGCGGTGTGCGAAAAATCGCCCATGC
CCTTAATAAGCCAAAAGGCTTTGAATATTATTGAGAGTTTTGGGAATTGCGTGCGAGTGGGTAATGAAGAATTGGTGGAT
GCCAGCGTGGCGACAAACGGGAGCGCGCTTGCGTTTTTAAGCTTGGTAGCGAGCAGTTTGAAAGATGCCGGTATTAGAGA
GGGCTTGAACGCTAAAGATTCTTTAGAATTGGTGAAGATGAGTTTTAAAGGCTTTGCCAAGCTGTTAGAAAAAGAACGCC
CTGAGATGATTATAGAGCAAATTTGCACCCCTAAAGGTGCAACGATTGAAGGCTTGAGCGTTTTAGAAAAAAAGGGGGTT
AGGGGAGCGTTCATCAAAGCATGCCGCAAGAGCGTGAAAAAAATACGCCTCTAA

Domains

Predicted by InterProScan.

NADP oxidoreductase coenzyme F420-dependent (F420_oxidored)

(4-94)

Pyrroline-5-carboxylate reductase dimerisation (P5CR_dimer)

(156-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  proC Campylobacter jejuni subsp. jejuni 81-176

37.008

98.833

0.366

Multiple sequence alignment