Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   D4K04_RS07720 Genome accession   NZ_CP032904
Coordinates   1563458..1563718 (+) Length   86 a.a.
NCBI ID   WP_000602758.1    Uniprot ID   -
Organism   Helicobacter pylori strain 169-A-EK5     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1558458..1568718
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4K04_RS07695 crdR 1559268..1559909 (-) 642 WP_120853288.1 copper response regulator transcription factor CrdR -
  D4K04_RS07700 - 1559980..1560423 (+) 444 Protein_1466 site-specific DNA-methyltransferase -
  D4K04_RS07705 - 1560483..1561237 (+) 755 Protein_1467 hypothetical protein -
  D4K04_RS07710 - 1561249..1563165 (+) 1917 WP_139522291.1 toprim domain-containing protein -
  D4K04_RS07715 - 1563155..1563457 (+) 303 WP_139522292.1 TrbC/VirB2 family protein -
  D4K04_RS07720 comB3 1563458..1563718 (+) 261 WP_000602758.1 hypothetical protein Machinery gene
  D4K04_RS07725 - 1563731..1566229 (+) 2499 WP_139522293.1 VirB4 family type IV secretion system protein -
  D4K04_RS07730 - 1566222..1568156 (+) 1935 WP_139522350.1 type IA DNA topoisomerase -

Sequence

Protein


Download         Length: 86 a.a.        Molecular weight: 10184.06 Da        Isoelectric Point: 4.6082

>NTDB_id=280759 D4K04_RS07720 WP_000602758.1 1563458..1563718(+) (comB3) [Helicobacter pylori strain 169-A-EK5]
MILNYVETINVREISKKEKFLKLNMNSWIISFLSTSFLFVWSLLYGVVLLVALITMFYILEFFDEDITNIILANLTLKND
TKEYYA

Nucleotide


Download         Length: 261 bp        

>NTDB_id=280759 D4K04_RS07720 WP_000602758.1 1563458..1563718(+) (comB3) [Helicobacter pylori strain 169-A-EK5]
ATGATTTTAAATTATGTAGAGACCATCAATGTTAGAGAAATATCTAAAAAAGAGAAGTTTTTAAAGCTTAATATGAATAG
TTGGATCATTTCTTTTTTGAGCACTTCTTTCTTATTTGTGTGGTCTTTATTGTATGGCGTGGTGCTATTGGTGGCATTAA
TAACAATGTTTTACATACTAGAATTTTTTGATGAAGATATTACAAACATTATTTTGGCAAACCTAACGCTAAAAAATGAC
ACTAAAGAATATTATGCTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

44.828

100

0.453