Detailed information    

insolico Bioinformatically predicted

Overview

Name   proC   Type   Machinery gene
Locus tag   D4K04_RS06530 Genome accession   NZ_CP032904
Coordinates   1343953..1344726 (+) Length   257 a.a.
NCBI ID   WP_139522166.1    Uniprot ID   -
Organism   Helicobacter pylori strain 169-A-EK5     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1338953..1349726
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4K04_RS06525 hopL 1340259..1343939 (+) 3681 WP_139522165.1 Hop family outer membrane protein HopL -
  D4K04_RS06530 proC 1343953..1344726 (+) 774 WP_139522166.1 pyrroline-5-carboxylate reductase Machinery gene
  D4K04_RS06535 - 1344753..1345286 (+) 534 WP_000549912.1 Fic/DOC family protein -
  D4K04_RS06540 ybeY 1345372..1345797 (-) 426 WP_139522167.1 rRNA maturation RNase YbeY -
  D4K04_RS06545 - 1345850..1346344 (-) 495 WP_139522168.1 flavodoxin -
  D4K04_RS06550 - 1346435..1347016 (-) 582 WP_033737063.1 DedA family protein -
  D4K04_RS06555 ccoS 1347141..1347332 (+) 192 WP_139522169.1 cbb3-type cytochrome oxidase assembly protein CcoS -
  D4K04_RS06560 - 1347358..1348326 (+) 969 WP_139522170.1 NAD(P)/FAD-dependent oxidoreductase -
  D4K04_RS06565 - 1348523..1349683 (-) 1161 WP_139522171.1 HP1165 family MFS efflux transporter -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28111.75 Da        Isoelectric Point: 7.6878

>NTDB_id=280755 D4K04_RS06530 WP_139522166.1 1343953..1344726(+) (proC) [Helicobacter pylori strain 169-A-EK5]
MEILQFIGYGNMAQAILEGAHETLSKRFILEITGRNPEKIAPFLQEKNIQAQIVPYKDAIDIHQKFVFLLFKPYNLKDFN
YQGQAKSVLSALAGVGFEALNNAINSSHYLKCMPNIASKFALSSTAVCEKSPMPLISQKALSIIESFGNCVQVGNEELVD
ASIATNGSALAFLSLVASSLKDAGIREGLNAKDSLELVKMSFKGFAKLLEKERPEMIIEQICTPKGATIEGLSVLEKKGV
RGAFIEACHESVKKMHL

Nucleotide


Download         Length: 774 bp        

>NTDB_id=280755 D4K04_RS06530 WP_139522166.1 1343953..1344726(+) (proC) [Helicobacter pylori strain 169-A-EK5]
ATGGAAATCTTACAATTCATCGGCTATGGGAATATGGCTCAAGCGATTTTAGAAGGTGCTCATGAAACTTTATCCAAGCG
TTTTATTTTAGAAATTACCGGGCGAAACCCTGAAAAAATCGCCCCTTTTTTACAAGAAAAAAACATTCAAGCTCAAATCG
TGCCTTACAAAGACGCTATTGATATACACCAAAAATTCGTGTTTTTACTTTTTAAGCCTTACAACCTTAAGGATTTTAAT
TATCAAGGGCAAGCTAAAAGCGTTTTGAGCGCGCTAGCTGGCGTGGGTTTTGAAGCTTTAAATAATGCGATAAATTCTTC
ACATTACTTAAAATGCATGCCCAACATTGCAAGCAAGTTCGCCCTCTCTTCTACGGCGGTGTGTGAAAAATCGCCCATGC
CCTTAATAAGCCAAAAGGCTTTGAGCATTATTGAGAGTTTTGGGAATTGCGTGCAAGTGGGTAATGAAGAGTTGGTTGAT
GCCAGTATAGCGACCAATGGGAGCGCGCTTGCATTTTTAAGCTTGGTAGCGAGCAGTTTGAAAGATGCCGGCATTAGGGA
AGGCTTGAACGCTAAAGATTCTTTAGAATTGGTGAAAATGAGTTTTAAAGGCTTTGCCAAGCTATTGGAAAAAGAACGCC
CCGAGATGATTATAGAGCAAATTTGCACCCCTAAAGGTGCAACGATTGAAGGCTTGAGCGTTTTAGAAAAAAAGGGGGTT
AGGGGAGCGTTTATAGAAGCTTGCCATGAAAGCGTGAAAAAAATGCACCTCTAA

Domains

Predicted by InterProScan.

NADP oxidoreductase coenzyme F420-dependent (F420_oxidored)

(4-94)

Pyrroline-5-carboxylate reductase dimerisation (P5CR_dimer)

(156-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  proC Campylobacter jejuni subsp. jejuni 81-176

37.402

98.833

0.37

Multiple sequence alignment