Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   C7M53_RS09295 Genome accession   NZ_CP027789
Coordinates   1787250..1788029 (+) Length   259 a.a.
NCBI ID   WP_003181756.1    Uniprot ID   A0A1Y0YKK2
Organism   Bacillus licheniformis strain TAB7     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1782250..1793029
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M53_RS09275 (C7M53_09260) trmFO 1782947..1784251 (+) 1305 WP_003181748.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  C7M53_RS09280 (C7M53_09265) xerC 1784318..1785232 (+) 915 WP_003181750.1 tyrosine recombinase XerC -
  C7M53_RS09285 (C7M53_09270) hslV 1785246..1785791 (+) 546 WP_003181752.1 ATP-dependent protease subunit HslV -
  C7M53_RS09290 (C7M53_09275) hslU 1785808..1787211 (+) 1404 WP_119953757.1 HslU--HslV peptidase ATPase subunit -
  C7M53_RS09295 (C7M53_09280) codY 1787250..1788029 (+) 780 WP_003181756.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  C7M53_RS09300 (C7M53_09285) flgB 1788383..1788772 (+) 390 WP_016886439.1 flagellar basal body rod protein FlgB -
  C7M53_RS09305 (C7M53_09290) flgC 1788772..1789224 (+) 453 WP_009328519.1 flagellar basal body rod protein FlgC -
  C7M53_RS09310 (C7M53_09295) fliE 1789238..1789555 (+) 318 WP_003181764.1 flagellar hook-basal body complex protein FliE -
  C7M53_RS09315 (C7M53_09300) fliF 1789606..1791207 (+) 1602 WP_003181766.1 flagellar basal-body MS-ring/collar protein FliF -
  C7M53_RS09320 (C7M53_09305) fliG 1791221..1792237 (+) 1017 WP_003181768.1 flagellar motor switch protein FliG -
  C7M53_RS09325 (C7M53_09310) fliH 1792221..1792988 (+) 768 WP_119953759.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29073.42 Da        Isoelectric Point: 4.8196

>NTDB_id=280736 C7M53_RS09295 WP_003181756.1 1787250..1788029(+) (codY) [Bacillus licheniformis strain TAB7]
MALLQKTRKINAMLQNAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGFSINQQIENDRMKKMLEERQFPEDYTKSLF
NIPETSSNLDINSEYTAFPVENRDLFQAGLTTVVPIIGGGERLGTLILSRLQEKFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLMELEKLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=280736 C7M53_RS09295 WP_003181756.1 1787250..1788029(+) (codY) [Bacillus licheniformis strain TAB7]
ATGGCTTTATTACAAAAAACAAGAAAGATTAATGCAATGCTGCAAAATGCGGCAGGGAAGCCGGTTAATTTTAAAGAAAT
GGCCGAAACGCTTCGCGATGTGATTGATTCGAACATTTTCGTCGTCAGCCGCAGAGGAAAGCTTCTCGGTTTCTCGATCA
ACCAGCAGATCGAAAATGACCGGATGAAAAAAATGCTTGAAGAGCGCCAGTTTCCTGAAGATTATACAAAAAGCCTGTTC
AACATTCCGGAAACGTCATCTAACCTTGACATCAACAGCGAATACACAGCTTTCCCTGTGGAAAACCGCGATTTGTTCCA
AGCGGGTCTGACCACGGTCGTTCCGATCATCGGAGGAGGCGAAAGACTGGGCACCTTGATTCTGTCCCGCCTTCAGGAGA
AATTCGAGGATGACGATCTGATCCTTGCCGAATATGGCGCCACTGTCGTAGGAATGGAAATTCTCAGAGAGAAAGCGGAA
GAGATCGAAGAGGAAGCGCGCAGCAAAGCGGTCGTTCAAATGGCGATCAGTTCACTATCTTACAGCGAGCTTGAAGCAAT
TGAACATATTTTTGAGGAGCTTGACGGAAATGAAGGCCTGCTTGTCGCTAGTAAAATTGCAGACCGCGTCGGCATCACCC
GCTCGGTCATTGTCAACGCGCTCCGTAAACTTGAAAGCGCCGGTGTCATTGAATCAAGGTCACTAGGGATGAAAGGCACA
TACATCAAAGTGCTGAACAACAAATTTTTGATGGAGTTAGAAAAACTAAAGTCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Y0YKK2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

94.595

100

0.946
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467

Multiple sequence alignment